K33139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33139

Determination of introduced cDNA(s)

  • J013071P05 - Rice Full-length cDNAs - Original: J013071P05

    full reading [+] show sequence

    Nucleotide sequence: J013071P05 - full reading 
    GATCTTCTCT CTATCTCTCT CTCTCCCGTG AGAATGGCGG GCGCGCCATA 
    GGGGCGGCGG CGAGGCGGCG GTTGGAGCAC TGTCGCCGGA GCCGGGGATA 
    CCGCCGCCGC AACTTCCGCG TCGGCCACCA CGTTGCTCCC ATCCACCTCG 
    CGGAGATGGA GCATGCGCCG CTCCTTGACC CCGTCGAGCT GCTCCGGGGA 
    ACGCCTAGCG GTCGCTCCCC CACGTCTTCA GCGACGGGAA CGACGGGAGG 
    AGCGTGGCCT GGTGGCGAGC GCTCGACGCC GCTGCCTCCA CCGCGGCGGC 
    GCCATCCGCG ACGGGATCCG GGGTCGAGGC GGGGGCGGCT CGGCGGAGAT 
    CACCATGGCC GCGGGAAAAG CCGCGATGAT GAACACGCGC GTGGAGGCCG 
    CCGTCACCTA GACCTCCACC GACTCCGACT CCGGTGGCGG CGGCGGCGGG 
    AGAGTCGGCC GAGCGATGAG GGTCAGCGCG CGGCGGCCGG CCGAGGAGGG 
    CCGGCCATGC GTGCTCTAAT CACAATTTTT TTGATGGTTA ATTTGCTAGT 
    ATTTATCAGT CGCCTGATTG ATTTTTAATG TGCTGTGTTT AATTTGATGG 
    TTAATTTGCT AGTATCGAGG CTGCGTGCCC CGGCGTCATC TCCTGCGCGG 
    ACATTGTCGC GTTCACTGGC CACGACGCAT CGAGGTACAT GAGCAACGGC 
    GGCGTCAAAT TCAATGTCCC GGTCGGCCGC CTCGACGGCA TTGTCTCGTC 
    CTCCGAGGTC GCCCAAAATA TGCTCCCTGA CTCCAAGGCC GACTTGGACA 
    AGCTCACAGC GCCAACTTCG CGGCGAAGGG ATTCACCCCG GAGGAGCTGG 
    TGATCCTCTC TGGCGCGTAC TCCATAGGCA AGGCGCACTG CTTCTCCTTC 
    AACGACCGCC TCACCGAGCC GAACTCCGAG ATCAATGCCA ACTAGCACGA 
    CAACGTCCTG AACAAGACCT GCTACGCCGC CCCGAACGAG ACGACGTTGG 
    CGAACAACAT CCGCGACATC GACGTGGCGA CGCTGGGGCC CCGGCGCCAG 
    CGCTCCACCC GCCGCTCCAC CCGCGGCCTG CTGCCTCACA GCTCCGTCGC 
    CGCCCCTCTG CGCCGCCCGC CGCTGCTCGC CATTCTCAGG GGAGATAGAG 
    AGAGGGGATA GAGAGGAGAG AGAGAAGGGG TAATGAGGAT GACAGGTGGG 
    GTCCACGTGG GCCCCACCAT TTTATTATTA TTGTGTGTGA AACTGACATG 
    TGGATCCCAT AGATTTTATT ATTTTTCGGA TCGAATTGCC

    Gene models with high sequence identity

    1. AT4G33420.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-16; Score: 48.10

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Haem peroxidase, plant/fungal/bacterial 0.000011
    FPrintScan Haem peroxidase, plant/fungal/bacterial 0.000011
    Gene3D no description 0.000059
    Gene3D no description 0.000000000046
    HMMPfam Haem peroxidase, plant/fungal/bacterial 0.00000000056
    HMMPfam Haem peroxidase, plant/fungal/bacterial 0.000000000000084
    superfamily Haem peroxidase 0.0000000019
    superfamily Haem peroxidase 0.00000000000004
    ProfileScan Haem peroxidase, plant/fungal/bacterial 9.743
    ProfileScan Haem peroxidase, plant/fungal/bacterial 14.165

    See the detailed result >

    AT4G33420.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR