K33140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33140

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33140

Determination of introduced cDNA(s)

  • J023026A06 - Rice Full-length cDNAs - Original: J023026A06

    full reading [+] show sequence

    Nucleotide sequence: J023026A06 - full reading 
    GTGTGTTCAA ACCGAAGCAA AACGGGAAGG AAAACCAACC AAATCCAAGA 
    AGCTGCTTCT ATGGCGACGG CGGCGGATGG CGTGGCGGTA GCGAGGCAAG 
    CGGAGCTCCG GCGGATCGAG GGCAACTCCT GCTTCAACAA GGCCCGCCTC 
    GGCGCCGCCA TCGACTGCTA CACCGAGGCT ATCGCTCTTT GCCCCGACGT 
    CGCCGTCTAC TGGCTCAACC GGGGCCTCTG CCATTTCAAG CGCAAGGAAT 
    GGGCTAAGGT CGAAGAGGAT AGCAGGAGAG CTCTTGCCCT TGATGACACT 
    CTGGTCAAGG TAACATCATC TCAATGTCCC TTGTTCATAC ATAAATCAAG 
    TGATTGTTAC AGGTCTTCAA CTTTGGTCCA GGGTCACTAT TTGCTGGGAT 
    GTGCCATGCT TGAGAAGGAA CAATGTGCTC TTGCTATCAA GGAATTCAAC 
    AAGGCTTTGG ATCTTCTTAA GTCTTCGAAT TTGGGGGACA AAATGGCGGA 
    GGACATTTGG CAGGTTCTTG CGAAGGCAAA ATACCAAGAT TGGGAAATAC 
    ACTCCACTAA GAGAGTTTGG AAGATGCAAA GTTTAAAGTA TGTTATGCAT 
    GAAAAATAAT TGCAATAATA ATGTTCCATA ATTGTGTTGC AGATTAACTG 
    TAGTGTGAAT CTTGGGTATT GGTGGCCAAT TTACTCCTAT AACAACCTGG 
    ACACTCCCTT TATTATCTAA AATTTATGAT GCTTTAAACT TTCTAACACC 
    ACTGTGTCAC ATGGACAATT AGGGAAGCAT GTGAAAATGC TTTGCAGGAG 
    CACCACTTTC TTAGTGGCAC ACTTGTGGGA GATGGCTCAA CCAATGAGTA 
    TACAGACCAA CTGAAATTGT TATCAGAAGT CTTCACCAAA GCTACAATCG 
    ACGATACACC AACAGATGTA ATATTATTAT CTATGTTATC TCATGTTCAA 
    CATCTTTGTG CTAGCATATT TTTTTTCTCT GTGATCTTAG GCTGTTGCTA 
    CCTGAAAATC TAGGTGCCTG ACTACCTTTG CTGCCAAATA ACCTTTGAGA 
    TTTTTAGAGA TCCAGTGATC ACACCCAGTG GTATAACGTA TGAGAGGTCC 
    ATAATCCTTG AACATCTTTG CAAGGTGGGC AATTTCGACC CGGTGACACG 
    AGAGCCTCTG AAAGAGCATC AATTGGTTCC TAACCTGGCT ATAAAGGAAG 
    CAGTCCAAGC CTACCTCAAG AATCACAGTT GGGCCTACAA GTTGAACTGA 
    TGATGTTGCT CTGTAGTTGC TTAGTGCTAA CAACAGGTGT TGATAAAATG 
    TTGGGTTGTC AAGGGGGAAT TCTTTGCTTT TCTGATGTAA TGTATAAGCA 
    AGTTCATTCG TGCCCTCATG GAATTGATTG ATTCTTGGGC AACTTCTGAC 
    GAACCTTGGA CAATTGTACA TAAAACATCA TAGCAGAACC TTGGACGGTT 
    TCAGACATAC CGTGCCAAAA TGACAATTCT CAGTGACAAA TTATTCTTTT 
    GTTCGGT

    Gene models with high sequence identity

    1. AT3G07370.1 [+] show detail - carboxyl terminus of HSC70-interacting protein
      E-value: 1e-36; Score: 151.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF57850 2.79999889404084e-16
    HMMSmart U box domain 3.39999972437717e-26
    HMMPfam U box domain 1.1e-27
    HMMPanther PTHR22904:SF27 2.69998997787803e-41
    HMMPanther PTHR22904 2.69998997787803e-41
    Gene3D Znf_RING/FYVE/PHD 1.10000150671643e-19
    superfamily TPR-like 1.6e-19
    HMMPanther CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN 2.6e-30
    HMMPanther TPR REPEAT CONTAINING PROTEIN 2.6e-30
    HMMSmart Tetratricopeptide repeat 0.67
    HMMSmart Tetratricopeptide repeat 0.015
    HMMSmart Tetratricopeptide repeat 17
    Gene3D Tetratricopeptide-like helical 4.6e-20
    ProfileScan Tetratricopeptide repeat-containing 9.732
    ProfileScan Tetratricopeptide repeat-containing 7.172

    See the detailed result >

    AT3G07370.1

    Model type
    Protein coding
    Short Description
    carboxyl terminus of HSC70-interacting protein
    Curator Summary
    Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.
    Computational Description
    carboxyl terminus of HSC70-interacting protein (CHIP); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to salt stress, response to temperature stimulus, response to abscisic acid stimulus, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), U box domain (InterPro:IPR003613), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.2); Has 6721 Blast hits to 5903 proteins in 442 species: Archae - 38; Bacteria - 482; Metazoa - 2236; Fungi - 1004; Plants - 1936; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR