K33142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33142

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33142

Determination of introduced cDNA(s)

  • J033023H22 - Rice Full-length cDNAs - Original: J033023H22

    full reading [+] show sequence

    Nucleotide sequence: J033023H22 - full reading 
    ACCCATCTCA TCATCACCCC ATACCTAGCC GTTTGGCCCG TTTCATCCTC 
    CTCTTCTTCT TCCTCCTGCC ATTTCTTGGC ATATTGCGAG TTCTTGGCTG 
    CCATTTTCTG GGCAGTGGAT CGGAGGAGGA GATTGGGGAT TGGGCAAGAA 
    TTATCCTGGT ATTGTGGATA TAAGATTTGC AGAGGAACAG TGGGTGGGTT 
    TGTGCTTTCG TGGTGGTGGG TGAGTGAGGC GTCGCTTTCC GGCGAGGTTC 
    GTACGTGTGG AGTCTCGCGG CCGCGCCCGT CGCCGTCAGT CCTCGCCACG 
    CAACCGCGCC GTCGCTTCTA AACTCCGGTC CGGAGGCGGC TGCTCCCGCT 
    CCTTCGCCGG CAGAGGATGG CGGTGCTCGC GGCGCCGGTG GTCGCCGCCG 
    TGCTGCTGCT CACCTGGGCG GCGTACGGCG AGGCCCAATA CGTGCTGTAC 
    AAGGACGCCA CCAAGCCGGT GGAGGCGCGC GTCACCGACC TCCTGGCGCG 
    GATGACGCTC GCGGAGAAGA TCGGCCAGAT GACGCAGATC GAGCGGCAGG 
    TCGCGTCGCC GCAGGTCCTC AAGGACTACT TCATCGGGAG CTTGCTTAGC 
    GGCGGCGGGA GCGTGCCGAG GAAGCAGGCG ACGGCGGCGG AGTGGGTGAG 
    CATGGTGAGC GACTTCCAGA AGGGGTCGCT CTCGACGCGG CTCGGCATCC 
    CGATGATCTA CGGCATCGAC GCCGTGCACG GACACAACAA CGTCTACGGC 
    GCCACCATCT TCCCCCACAA CGTCGCGCTC GGCGCCACAA GGGATCCGAA 
    CCTGGTGAAG AGGATCGGCG CCGCGACGGC GCTGGAGGTG AGGGCGACCG 
    GCATCCAGTA CGCGTTCGCG CCGTGCATCG CGGTGTGCAG GGATCCGAGG 
    TGGGGGAGGT GCTACGAGAG CTACAGCGAG GACCACCGCA TCGTGCAAGC 
    CATGACGGAG CTCATCCCCG GCCTGCAGGG CGACGTCCCG GCCAACTTCA 
    CCAGCGGCAT GCCCTACGTC GCCGGAAAGA ACAACGTGGC GGCGTGCGCC 
    AAGCACTTCG TGGGCGACGG CGGCACGCAG AATGGTGTCA ACGAGGACAA 
    CACCATCATC GACCGCCGAG GGCTGATGAC CATCCACATG CCGGCGTACC 
    TCAACGCGCT CCAGAAGGGC GTCTCCACCG TCATGATCTC CTACTCGAGC 
    TGGAACGGCA TCAAGATGCA CGCCAACCAC GACCTCGTCA CCCGCTACCT 
    CAAGGACAGG CTCAATTTCA AGGGCTTCAC AATCTCGGAT TGGGAGGGAA 
    TTGACAGGAT CACAACACCA GCAGGTTCAA ACTACTCCTA CTCTGTCCAG 
    GCTGGAGTTC TTGCCGGCAT TGACATGATC ATGGTGCCGA ACAACTACCA 
    GTCGTTCATC AGCATCCTGA CCAGCCATGT CAACAACGGC ATCATTCCGA 
    TGAGCAGAAT CGACGACGCA GTGACTAGGA TTCTGCGCGT CAAGTTCACC 
    ATGGGACTCT TCGAGAACCC CATGCCCGAT TCGAGCATGG CTGATCAGCT 
    GGGGAAGAAG GAACACAGAG ATTTGGCGAG GGAGGCAGTG AGGAAGTCGC 
    TGGTGCTCCT GAAGAACGGC AAGACAAGTG ACAAGCCGAT GCTGCCGCTG 
    TCCAAGAAGG CGCCCAAGAT CCTCGTCGCC GGCAGCCACG CCGACAACCT 
    GGGCTACCAG TGCGGCGGCT GGACGATCGA GTGGCAGGGC GACACCGGCC 
    GCATCACCGT CGGCATGACC ATCCTCGACG CCGTGAAGGC GGCGGTGGAC 
    CCGTCGACGA CGGTGGTGTT CGCCGAGAAC CCCGACGCCG ACTTCGTCAA 
    GAACGGCGGC TTCTCCTACG CCATCGTGGT GGTCGGCGAG CACCCGTACA 
    CGGAGACCAA GGGTGACAGC TTGAACCTGA CCATCCCGGA CCCCGGGCCG 
    AGCACGGTGG CGACGGTATG CGGCGCCGCG CAGTGCGCCA CGGTGCTCAT 
    CAGCGGCCGG CCGGTGGTGG TGCAGCCGTT CTTGGGCGCC ATGGACGCGC 
    TCGTCGCCGC GTGGCTGCCG GGGACCGAGG GGCAGGGCGT CACCGACGTG 
    CTGTTCGGCG ACTACGGGTT CACCGGCAAG CTGCCGCGGA CGTGGTTCAA 
    GTCGGTGGAC CAGCTGCCGA TGAACTACGG CGACGCGCAC TACGACCCGC 
    TGTTCCCGCT CGGATTCGGC CTCACCACCC AGCCTAGGAC CTACTAGCTA 
    GCTTAGCTGC AGTGATAAGG AGATATAGGA AAGATGAAAA TTTCACTAAA 
    TGGGAATTCG TACTCCCTGC CATTGTTTCC CTTGATACTA TTTTTCTCTG 
    TTTTGGTGTA TGCTCGATCC TCATTGGCGA GCATAATGAG GATCAATTTG 
    ATTATGAGAA ATTCCATTTA CACC

    Gene models with high sequence identity

    1. AT5G20950.2 [+] show detail - Glycosyl hydrolase family protein
      E-value: 0; Score: 900.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 3, N-terminal 8.9e-70
    HMMPfam Glycoside hydrolase, family 3, C-terminal 2.6e-39
    FPrintScan Glycoside hydrolase, family 3, N-terminal 4.4e-24
    FPrintScan Glycoside hydrolase, family 3, N-terminal 4.4e-24
    FPrintScan Glycoside hydrolase, family 3, N-terminal 4.4e-24
    FPrintScan Glycoside hydrolase, family 3, N-terminal 4.4e-24
    FPrintScan Glycoside hydrolase, family 3, N-terminal 4.4e-24
    Gene3D Glycoside hydrolase, family 3, N-terminal 1.2e-121
    Gene3D no description 5.7e-67
    superfamily Glycoside hydrolase, catalytic core 4.1e-135
    superfamily Glycoside hydrolase, family 3, C-terminal 6.9e-76

    See the detailed result >

    AT5G20950.2

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family protein
    Computational Description
    Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR