K33149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33149

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33149

Determination of introduced cDNA(s)

  • J033038M11 - Rice Full-length cDNAs - Original: J033038M11

    full reading [+] show sequence

    Nucleotide sequence: J033038M11 - full reading 
    GGACGCTCCC ACTCCCACCG GAGCGCGGCG ACCGGAGCAC CCCATCTCCG 
    ACGCGCTATA TAAACCCCTC CTCCCCCCGG CTCTCCGTCC CCCATCGCTG 
    TGATTACCCA CCACAATAAA ACCAATCTAA CCCCGCCTGC AGATCCGCTC 
    CATCGATTCC CTCCCTAAAT CCTCCGCCAT TTTTTTGTTT GATCGGAGCT 
    TAGGGCTAGC GCTACCTCCG CCGCGCGGCG CCGTGTTAGG TTTTATAGGC 
    AGCAGCGGCC GCCGCGCGGT TGGTAGGGCT AGGGTTTTGG GGGTGGTGGT 
    GGTCTGGAGT TGCGGGGTGG GGATGGATCG GAAGAAGGCG GGGGTGCCGC 
    TCGTGTGCCA CGGCCACTCG CGGCCGGTGG TGGACCTCTT CTACAGCCCC 
    GTCACGCCCG ACGGCTGCTT CCTCATCAGC GCGAGCAAGG ACTCAAACCC 
    AATGATTCGC AATGGTGATA CTGGAGATTG GATTGGGACC TTTGAAGGTC 
    ACAAAGGTGC TGTTTGGAGC TGTTGCCTTG ACACCAATGC TCTACGTGCC 
    GCCTCTGGTT CTGCTGACTT CTCAGCTAAA GTATGGGATG CACTAACTGG 
    TGAAGAGCTT CACTCCTTCG AACACAAGCA CATTGTTCGT GCATGTGCTT 
    TTTCTGAGGA CACCCACCTG TTACTTACTG GAGGTCTTGA GAAAATTTTA 
    CGTATATATG ATATAAATCG CCCAGATGCA GCCCCAAGAG AGATTGACAA 
    ATCTCCTGGC TCTGTCAGAA CTGTTGCTTG GCTTCATAGT GACCAATCTA 
    TATTAAGTTG CTGCACTGAT ATGGGTGGCG TAAGGTTGTG GGATGTAAGG 
    AGTGGAAAAA TTGCTCAAAC TCTTGAAACC AAGGCTACTG TTACTAGTGC 
    AGAAGTAAGC CAAGATGGCC GGTACATCAT TACAGCTGAT GGTTCCAGTG 
    TCAAATTTTG GGATGCAAAT TACTTCGGAC TTGTTAAGAG CTATAATATG 
    CCATGCAATG TGGAATCAGC TTCTCTTGAA CCAAAGTATG GGAACAAATT 
    CATTGCTGGT GGAGAAGACA TGTGGGTCCA TGTCTTTGAT TTCTTCACTG 
    GTGAAGAAAT AACTTGCAAC AAAGGCCACC ACGGTCCAGT CCATTGCGTC 
    CGGTTTGCTC CTGGCGGCGA GTCGTATGCA TCAGGATCAG AGGATGGAAC 
    CATCCGAATC TGGCAGCTGG GCCCAGCTAC CAGTGACGAG CAAGAGTCGC 
    CGCCGAATGC AAATGGGAAG CTGAAGGTCA ACACGGTGAG TGACGCTGCT 
    CGCAAGATCG AAGGCTTTCA CCTCCCCAAG GACGGCCAGA CTGAGGGATA 
    GATACTAGTG CGGCACCGCT TTGATTCATG CCTGGGAATG TGATGGTTTG 
    AGATTTGTGT TGTCAAAGCT GGTGTTGCCT GTCTTGCTTC CCAATTTCCC 
    TTTGATGGAT GGTATCCTTC CGAACCAGGT GGTTTTGCAG CCTTGAGAAA 
    AATGGTGGGT TTTAGTAACA GCAATGGTAT TTCCAAAAGA AGATAGAGAG 
    AGAGAGAGGC CCCGGGGGGG GGGGGTGAAA TTTTGTATGA GGCCTCCTAA 
    CTCCAATAGT CACTGCCAAT ATCTAATGCC AAAAGGTTGA AAAATTATAA 
    TTTCGTTTGC ATT

    Gene models with high sequence identity

    1. AT3G15610.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 6e-161; Score: 564.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart WD40 repeat 20
    HMMSmart WD40 repeat 2.6e-06
    HMMSmart WD40 repeat 8e-06
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 0.0086
    HMMSmart WD40 repeat 180
    HMMSmart WD40 repeat 1.5e-08
    superfamily WD40 repeat-like-containing domain 2.4e-65
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.047
    HMMPfam WD40 repeat, subgroup 3.6e-06
    HMMPfam WD40 repeat, subgroup 0.00036
    HMMPfam WD40 repeat, subgroup 0.23
    HMMPfam WD40 repeat, subgroup 0.023
    HMMPfam WD40 repeat, subgroup 6.2e-10
    Gene3D WD40/YVTN repeat-like-containing domain 1.3e-60
    ProfileScan WD40 repeat 2 11.478
    ProfileScan WD40 repeat 2 8.637
    ProfileScan WD40 repeat 2 14.485
    ProfileScan WD40-repeat-containing domain 27.131
    HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 5.6e-166
    HMMPanther WD40 REPEAT PROTEIN 5.6e-166

    See the detailed result >

    AT3G15610.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G52730.1); Has 43706 Blast hits to 23089 proteins in 800 species: Archae - 76; Bacteria - 7357; Metazoa - 15603; Fungi - 10314; Plants - 4879; Viruses - 0; Other Eukaryotes - 5477 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR