K33221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33221

Determination of introduced cDNA(s)

J013108M03 - Rice Full-length cDNAs - Original: J013108M03

full reading [+] show sequence

GAACTAGGCA AAGCAGCGTA ACACCCAAGT TACCTCCGCT CCCCTCCCCA 
CCGAATCCCC CCGATTGGTC GGCGATGTCG GCGGCGCCCC CGCCTCCCCC 
CCCGGAGTCC CCGGTCGCCG CCGCCGCCGG CGGAGGCGAC AAGGTGCTCG 
CCGCGGCGCA GCACATCGTC AAGTCGCTGG CGACATCCAA GAACGCCGCC 
GACGACATGA TCCGCATCCT CTCGGGCTTC GACAACCGCC TCTCCCAGAT 
CACCTCCGAC CTCTTCCCCT CCCCCGACCT CGCCGCTGAC TCCGACGAAC 
GGGGGAACCC CCTGTGGGGG CAGATCTCGG CCGCGGCCTT CGACGCCGCC 
GAGCAGCTCA TCCAGGTCTG GGACGGCACC CCGGAGGCGC TCGTCTTCGA 
GGCCACCGAG GACGAGGTCG CCGAGTACCT CTCCGCGGTC GACGTGGCCA 
TCGAGCACCT CGCGCGCGGC AGCGGCGGCG GCGCCGGCGG CGCGGGGTCC 
TCCTCCTCCT CCACCGCGGG CCGCGCCGGG GTCGCCGTGC AGCTCGCCAT 
GGCGCGCCTC GAGGAGGAGC TGCGCCACCT CATGGTCCGC CACGCCGTGC 
CGCTCGACCC CACGGGCCTC TTCTTCTCCC TGCGCCGCCT CTCGCTCGGC 
TCCATGGACG ACCTCGACAC CTCCTCCGAG TTCGACGCCG CCACGCCGCA 
CAGCATCGAC GTCGCGCCGG AGACCGCGCG CGGCGGGCCC CTGGTCAACC 
CCTTCGAGGA CCAGGTGTTC GACCCCGTGC GCCCTGAGGC CGTCGACGAC 
CTCCGCGCCA TCGCCGACCG GATGGCGCGC GCCGGGTACT CGCGCGAGCT 
CGCCGACGCG TACTGCGGCA TCCGCCGTGA CCTGCTCGAC GAGTACCTCT 
CCGCGCTCGG CGTCGAGCGC CTCAGCATTG ACGAGGTGCA GCGCATCGAG 
TGGAAGCACC TGAATGACAA GATGAAGAAG TGGGTGCAGG CGGTCAAGAC 
GGTCGTGCGT GTCCTGCTCG CTGGTGAGCG ACGCCTCTGC GATCAGGTGC 
TCAGTGTGTC CGATGAGCTC AGGGAGGAGT GCTTCATCGA ATCAACCAAA 
GGTTGTATTA TGCAGATTCT CAGCTTTGGG GATGCTGTGG CTGTGTGTCC 
CCGCTCGCCA GAGAAGCTCT CGCGGATTCT TGACATGTAT GAGGCACTTG 
CAGAGGTGAT CCCTGAGATG AAGGATTTGT GCTTGGGCAG TTCTGGGGAT 
GGTGTGATCA GCGATGTTCA GGCGAATCTT GATAGGCTTG GGGATGCCAT 
TAGGGGTACA CTTTTCGAGT TTGGGAAGGT TTTGCAGCTG GAGTCATCAC 
GGAGGGCAAT GACAGCTGGT GAGATCCACC CCATGACACG CTACGTCATG 
AACTATTTGA GGCTTCTGGT TGTTTACAGC GACACACTTG ATGCCCTCTT 
GGATGACAAT GCCGATGACC AAATTGATTT GGCAAGAGCT GAGGATCAGG 
ATCAGGAACA CTTGGAGAGC ATGACCCCTC TTGGAAAGCG CCTTTTGAAG 
CTGATATCTT ATTTGGAGGC TAACTTGGAG GAAAAATCTA AGCTGTATGA 
AGATAGCGCC CTGGAGTGCA TATTTTCCAT GAACAATTTG CTGTACATTG 
TTCAAAAGGT GAGGGACTCT GAGCTCGGCA AGATTTTAGG TGATCACTGG 
GTAAAAAGGC GTAATGGCAA GATCCGGCAG TATTCAAAGA GCTACCTAAG 
GATTTCCTGG ATGAAGGTTT TATCTTTTCT GAAGGATGAT GGACATGGAA 
GTGGGAGCGG CAGCAGCAGC GGCAGTGGCA GTGGGCATTC AAGTTCTCGG 
ATGTCCATCA AGGAGAAGTT CAAGAACTTC AACCTGGCCT TTGAGGAAAT 
ATACAGGAAC CAAACAACCT GGAAAGTTCC AGATCCTCAG CTCCGAGAAG 
AGCTGAAAAT ATCCATATCT GAAAATGTTA TTCCGGCATA TCGTGCTTTT 
TTGGGAAGAT ATGGTAGCCA AGTGGATGGG GGAAGAAATT CAGGGAAATA 
TATAAAATAC ACCCCAGAGG ACTTGGAAAG TCAGCTTTCT GATTTGTTTG 
AGGGTGCACC GGGGCCAGCC AACCACTCTA GAAGAAGAAC ATAGTTCATA 
TTTGGCAAGC CCTGTTAAAG GTATGATTTT GTCCAAGGAT TGTAAATTGC 
TTTACACTTC TTTCATGTGT GTTCTTGCTA CCTTTAGTAG TCATTGCAAC 
ACCATAATAC AATACAAGGA CCTTTCGTTA TGCACACTGT TGCAAGGTGT 
GTACTAAGGA ATATTGTACA TGTGTTGTTT CTGTTCTATC TCTTGCTGTT 
TTTTTCTGGG TGTTAGCTCT TCTAGATTTT CAGTACTATT TAACACATCA 
AAAGGCCCAA GAACTTGTTC AATTGGGTAG AGTTGGGTTT ACCATTACTA 
GTGCAGCCAT TTAGGAATAA CCTATTAAGG GTTATGAAGA AATATGATGT 
TCAGTAGCAT TGGAAGAAAC TCCATGCTAA AGTATGCACC ACAACCCGAG 
ACTTTGTCGG TCGAATTTTA CTGTTACAAA ATTTATGTTC CTGTAAACTT 
ATTTAATATT ATATATATAA CACTGATACT GCAACCACAG GCTTAAAAGT 
GTCCTTTAAT GATTTGAACA TTAAAACTAC TTGACTGTAA TGAGCTTGAA 
AATAAACCTT TTTGCTTATT TGTTCTCCTA AAGTTTGCCG TCTTCCTTAT 
GGTTATTTAG AACTTAGAAT CTTCTCTAGC AATAGCTTAT GAATAAGCAC 
GTTTCTTGGC AAACAATGAA ATATCAATGG TCCCTGTTAA CAGTACACTC 
AATGCTGAAA CCTCTTGTTC TCTAAAGCTT GGTTTGCACA CCTGAATTCA 
TGTATATTAG GCTTTTGACA TTCAAGTATC GTACTCAGCA TAGCACACCT 
GAATTCATGA GTGCATTCCA CAAACAATGT AAATTACTCG TCCTTTGGTA 
TCTGATTTCC CTTGTAGATG TTGCTCAAGT AAAATATTTG AATGAAATTG 
GAGTGCATGT TCATGTCCTC ATACCTGCTC CAGGAGATAG TGAGATACTG 
ATTGTAGTTA TGCTGTTCAT AGTTCATACT TACAAACTAG TATTCATATA 
AAGAACAGGC ACTACACGTT GTTTTTTCAT TAGTACACAC TGTACTACTA 
GTGTGTGGAT CATCTATCTC TGCTTTGCGC CTCTGCTAAT TTTTTGAGGT 
TTTGTATTTA TATTACCACT AGGTGAAATT TTTGTTCCTG TTAAAACAGC 
AAATTCCACC AATGTTTTTT TAAACAGTAT TGACAAGTAT GATTCCCTTG 
CATCATTATC TCTTAATTGT TTGATGTCAA AGCATCACTA ATTAAGTTTA 
ATTGTTTTCT AATCACATTA TGTACACTAA AATTTACAAC ATTGAATATT 
GTAAATGGAC CTTTGTGTGG AGAGGAGGAA AATATGTGTC AGTTGGAGCT 
AAATTCTACA AAAATCTGAA TAATGGTCGA AGTTCCTGAA ATGTTTCCCA 
ACCCTTGATA GCAGGTACCC CAAAAGCAAT CATAATCTGA AATTTGGATA 
CGATAATATG ACATGTCATG TCTGCAGGAT AAATGTAGAA ACTTATTAGT 
ACCAGGTAAA CAAAAGTGAT TGAATGAATG CACATTTCAA GTAGCTACTT 
AGCTAAGATC CGAGACATAC ATCTTTTGGA ATCATGTGAA TAGCACTTAT 
CGAAATCGAC AAAATGAGAT TAAAAAAAAG GGAAGATCTG CTATGCAAAT 
GATACTGGGG GTCCCAATGA ATACGTGCTA TAATTATTGA CACATTGATT 
GATAATTTCA TATGCCATGG CTTACCAATG CAAATTCTAC ATGTACAGTT 
ATTTTTTCTG AGGGTGGGAA TTGGGAACAA TTGGCTAGTG TACTCTTGTA 
AGGTCTTACA ACAGTGGAAA ATCAACAAAA GAAAAAAAGA AAACAGATTT 
ATGGGAATTG AACTCTAGTA ACTAGAGAGC AAAGGTGCAA CATCTGAGCT 
TGGCTATCGT TGGGCTTTCT TACATCATAT GATGTTGAAA AATATATGAT 
TGTGTCTTCT TAGCGTCATG TTTCCTTCTT CTTGCTAGGT TTCTGAATTT 
ATTTCCATGC CATTCGTATT TAAGTAAACA TGCTTTAGTT ATCCAGCCAG 
TAAATGTATA TTTTAAAACC ATTTTCATCT GAAATATATA TTTTTCATGT 
CAGATGACTT ATCTCCTGTT GTTAGTTAAA ATCAATCAAT ATGAACTATT 
TTGTTACATA TTTCATCAAA TCTTAACTGT TTATCATTGG ACTTCTTCGA 
TTGTTATTCT ACTTTTCTTT GTACGCTTGC TGTATTATGC CTCCTGTGAA 
CTATCTTTAG CTATATTTAT CCAATAATCT AGTTCTGATT TACTCAAAAT 
ATTTCCCCTC TATTTTACAG TTAACCTAAA CACAATGGCC TTTTTTATCT 
TATGAGTATG TTCATATTCT GTTGAATATG TTTATAAGTG AAGGCTGCTT 
CAATTTTGTA GTTTTGTGGA GAAGCAAATC GCTGAATTGA TATAAGATTT 
TCTCTGTAAG TCTCAAGCAA GTAAATATTG CAATTCAAAA CCGAAATAAA 
AGGCTGTAGA AGAATGGTAA ATGGTCTCTT TAGCTCCTTT TATGCTAAAG 
AAATCACCAC GCAGTTCAAT CATTTTCTCT TTCAAACTGA AGTTTTGGCT 
TTATTCTTTT GCAATTTTGT GTTTCTCAAC CTCTCTTTTG TTCCCTTTGC 
ATAACAGTAT AAAATTCTAA ACTGTTTCTG GTTCTCTGCT GCTATTTTTC 
TTGTTAATCT GGGAATGGAT GAAGGATTTG CAGTCTCTTT CAAGATAGAA 
CCGTTCAAAA GTGAAGCAAA GGGGTGGATT TAAACAGTAA TAAGATGGCG 
CAACGTTGAT ATTTCTGACA CTAAAGAAAA ACAACTGGTA ATACTTGGTT 
TTGTGTTCTG TATCCTTCAG TAATTCCAAA TTGAGTTCTG CTATACGTAC 
GACTGAAGCT GTAGGACTCA CATCCGACCA CCAATCAACA CTCTCAACAT 
CTTCCCATGT GGGCCTAGGC ATGTAGCAGC TTTGCACTAG TCAGACACAA 
ATGGTACACG CTAGTCATAT GTATAGACAT TTCCTTCCAA ATTTCAGAAG 
GATCCTCTTT ACTGATTTAT TTCTGTTTAA ATCCCTACGG AGTTCATGTC 
ATTTTACTTT CAGATATGAA ATCTGAAATT TCCGTTCTTC TATTTCTAAC 
TTGCAGGACG TACAGATTGT GCTATTAAAC ACAGTAGAGT TGACATCTTT 
TTTTTCGTCA CCCGCACATA TCATTGTAGT ACTTGTGCAT TTTCCCGGAA 
AAAAGTACTT GTGCATTTGT GCCGCTCTGT GTTATGTACA GTTGGATATC 
TTATGATATT ACTAGAGTGA TGTTTCCTGG TGAATTTTGT AACTGATTTC 
ACTACATTAT CAGAAGTCTG ATGTAATGCT GCCTCAGAAA TATAGCAAAA 
CTTTATT

Gene models with high sequence identity

AT5G50380.1 [+] show detail - exocyst subunit exo70 family protein F1
E-value: 2e-148; Score: 525.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	EXOCYST COMPLEX PROTEIN EXO70	2.5e-157
HMMPanther	Exo70 exocyst complex subunit	2.5e-157
HMMPfam	Exo70 exocyst complex subunit	4.4e-121
Coil	coiled-coil	0

See the detailed result >

AT5G50380.1

Model type: Protein coding
Short Description: exocyst subunit exo70 family protein F1
Curator Summary: A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description: exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link: InterPro Scan - TAIR