K33231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33231

Determination of introduced cDNA(s)

  • J013000P07 - Rice Full-length cDNAs - Original: J013000P07

    full reading [+] show sequence

    Nucleotide sequence: J013000P07 - full reading 
    GATCCCCCCT CCTCCTCCCC TCTTCGCCTC CGTCCACCTC GCGTGCGGCG 
    GGAGGGAACC CACCGACCTC GTTCCCCTCC CCCCACGTAC ACGACAGCGA 
    AGAGCCCCCC CCAAGCTAGG GCTCCCCGGC GGATCCTCGG CGGGGTGGGT 
    CTCGCGCCGC CCTTCCCCCG ATTCGGCGGC GGCGCCGGCC GCGATGGCGA 
    CCCACGAGCG GAAGACGATC GATCTGGAGC AGGGGTGGGA GTTCATGCAG 
    AAGGGCATCA CCAAGCTGAA GAACATCCTC GAGGGGAAGC CCGAACCCCA 
    GTTCAGCTCC GAGGACTACA TGATGCTCTA CACGACGATT TACAACATGT 
    GCACGCAGAA GCCGCCGCAC GACTACTCGC AGCAGCTCTA CGAGAAGTAC 
    CGCGAGTCCT TCGAGGAGTA CATCACGTCC ATGGTCTTAC CTTCATTAAG 
    AGAGAAACAT GATGAGTTTA TGCTGAGAGA GCTAGTAAAA CGGTGGTCAA 
    ACCATAAAGT GATGGTTCGG TGGCTATCAC GCTTCTTCCA TTATCTTGAT 
    CGGTACTTTA TTTCAAGGAG GTCCCTACCA CAACTAAGTG AAGTTGGGCT 
    TAGCTGTTTC CGGGATCTGG TATATCAAGA GATCAAAGGA AAAGTAAAAA 
    GTGCGGTGAT ATCCTTGATA GATCAAGAAC GTGAGGGTGA ACAAATTGAT 
    AGGGCCCTGT TAAAGAATGT TCTGGATATA TTTGTTGAGA TTGGCTTGAC 
    TAGCATGGAC TACTACGAAA ATGATTTTGA AGATTTCTTG CTCAAAGATA 
    CTGCAGACTA TTACTCTATA AAAGCCCAGA CCTGGATTCT TGAGGACTCT 
    TGTCCAGATT ACATGTTAAA GGCAGAGGAG TGTCTGAAAA GGGAGAAAGA 
    GCGAGTTGCT CATTATTTGC ACTCCAGTAG TGAACAGAAG TTGTTGGAGA 
    AAGTGCAACA TGAGTTGCTA ACTCAATACG CAAGTCAGCT CCTGGAGAAG 
    GAGCATTCTG GATGCCATGC ATTGCTTCGT GATGACAAGG TTGATGATCT 
    CTCTAGAATG TACAGGCTCT TTTCCAGAAT AACTCGTGGT TTAGAACCTG 
    TTTCTCAAAT ATTTAAGCAG CATGTTACTA ATGAGGGCAC TGCCTTAGTG 
    AAGCAAGCCG AAGATGCTGC TAGTAATAAG AAGCCAGAGA AGAAGGAGAT 
    AGTTGGTTTA CAGGAACAGG TTTTTGTCCG GAAAATCATT GAGCTTCATG 
    ACAAGTATGT AGCTTATGTT ACGGATTGTT TTCAGGGGCA CACTCTCTTC 
    CATAAGGCAC TTAAGGAGGC TTTTGAAGTT TTTTGCAACA AAGGTGTTTC 
    TGGCAGTTCA AGTGCTGAAT TACTAGCTAC CTTCTGTGAC AATATCTTAA 
    AGAAAGGCGG TAGTGAAAAG CTTAGTGATG AAGCAATTGA AGATACCCTT 
    GAGAAGGTTG TAAGGTTACT TGCCTACATT AGTGACAAGG ACTTGTTTGC 
    TGAGTTCTAT AGAAAGAAGC TTGCAAGGAG ATTGCTTTTT GACAAGAGTG 
    CTAATGATGA ACATGAGAGA AGCATCCTTA CCAAGCTAAA GCAACAATGT 
    GGAGGGCAGT TCACTTCCAA AATGGAGGGC ATGGTTACTG ATCTCACTGT 
    GGCAAGAGAT CACCAGGCTA AATTTGAAGA GTTCATAAGC ACACACTCAG 
    AGTTGAATCC TGGAATAGCC TTAGCTGTTA CTGTCCTCAC AACAGGATTT 
    TGGCCAAGTT ACAAATCTTT TGATATAAAT CTACCTGCAG AAATGGTGAA 
    ATGTGTAGAG GTTTTCAAGG AGTTTTACCA AACAAGAACA AAACACAGGA 
    AACTTACCTG GATTTATTCA CTGGGAACCT GTAATATTAA TGCTAAATTT 
    GAGGCCAAAA CTATTGAGCT CATTGTTACA ACTTATCAGG CTGCATTGCT 
    GCTGCTGTTT AATGGAGTTG ATAGACTCAG CTATTCTGAG ATTGTGACAC 
    AGTTAAATCT CTCAGATGAT GATGTTGTTC GATTGCTCCA TTCTCTATCT 
    TGTGCAAAAT ACAAGATTCT TAGCAAAGAA CCAAATAATA GATCTATTTC 
    ACCAAATGAT GTCTTCGAGT TCAACTCAAA GTTTACTGAC AAGCTGCGAA 
    GATTAAAGAT ACCTCTTCCT CCAGTTGATG AGAAGAAGAA AGTAGTTGAA 
    GATGTTGATA AGGATCGCAG ATACGCAATT GATGCATCAA TTGTGCGTAT 
    TATGAAGAGT CGCAAAGTAT TGGGTCATCA GCAACTTGTG ATGGAATGTG 
    TGGAGCAGCT TGGACGCATG TTTAAGCCTG ACTTCAAGGC AATAAAGAAG 
    CGAATTGAGG ATCTTATCAC AAGGGATTAC TTGGAGAGGG ATAAAGACAA 
    CCCAAATGTG TACAGATACT TGGCTTGATG GGTTTTCTGC TGGTGGACGG 
    ATACTTGCCG GAGCCTGACT TCTGTGCCCT GCGGTGCTGC ATTTACGAAT 
    GGGAAAATGA TAAAAGTCGT CTTGTGGTAC AACACCACTG GCTGCTTTGA 
    GTTTTCAGGC AATGGTTGGT CTGTCAAAAA CTCAGCAGAG TCCGCCAGGA 
    CAAAGATTTG CTGCTGGGAC TTCGCAAGGT TCTCCTAAAT GTTGTAATCT 
    TATACTAGGT GATGCCTTAT TTGTTACTTT TCTGCATATC ATATAGTTTT 
    GTTGATTTTC AATATGTTGT CTAGAATCTA GATAAATGGA GGGATACTAT 
    GAGTTAGCGA TCCAACCGTG CCCTACTCTC AAGTCACAAA GCAGTAAGAT 
    GGCCATCTCT GCTGTAATAT TTATTGTGTA TGATGTCGTA GATATGCTGG 
    AAGCACTAAT GATAATGGTG CATTGCTTCG CCCCACATCG TGGTTTATTG 
    TACAAGTTGA GCTACTTTGT TAAGTACTAT TTGTGCTTGT AATTTTGCAA 
    GTTTGCGGTA CTTTTTTTTT GGCATAAAAT GTTGATTAAG CCGTGACCCC 
    CAATAAAGTG TTATTAGATC CCTTATTTC

    Gene models with high sequence identity

    1. AT4G02570.4 [+] show detail - cullin 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CULLIN-RELATED 6.7e-227
    HMMPanther CULLIN 6.7e-227
    PatternScan Cullin, conserved site 0
    Gene3D no description 1.6e-33
    Gene3D no description 2.2e-34
    Gene3D no description 1.1e-31
    Gene3D no description 4.9e-33
    Gene3D no description 4.2e-21
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4.4e-32
    superfamily Cullin repeat-like-containing domain 2.6e-107
    superfamily Cullin homology 2.9e-84
    superfamily "Winged helix" DNA-binding domain 3.2e-30
    HMMSmart Cullin homology 3.7e-72
    HMMSmart Cullin protein, neddylation domain 2e-33
    ProfileScan Cullin homology 50.192
    HMMPfam Cullin, N-terminal 1.9e-187
    HMMPfam Cullin protein, neddylation domain 5.4e-28

    See the detailed result >

    AT4G02570.4

    Model type
    Protein coding
    Short Description
    cullin 1
    Curator Summary
    Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
    Computational Description
    cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, conserved site (InterPro:IPR016157), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1).
    Link
    InterPro Scan - TAIR