K33242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33242

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33242

Determination of introduced cDNA(s)

  • J023048L01 - Rice Full-length cDNAs - Original: J023048L01

    full reading [+] show sequence

    Nucleotide sequence: J023048L01 - full reading 
    GGTTGCATTT CTCGTCCTGA TTTGCGTCCT GCAGCTCTCT CTCATCACAG 
    TTTCGCAATG GCCAAAAAAA CAATACTGCA GGTGGTTTGC GCGGTGGCGC 
    TGGTGGCGCT GTGCGCGTGC GGCGTCGCGG CGTCACCGTC GTCGCCGGCG 
    GGAGCGGGGT GCCGGAAGCA CATCGCGAGG ATCACGGAGT ACGGCGGCGT 
    CGGGGACGGG AGGAGGTCCA ACACGGCGGC GTTCGCCAAG GCGGTGGCGG 
    ACCTGTCGCT GCGCGCCGGC GACGGCGGCG CGGCGCTGGT GGTGCCGAAG 
    GGGAAGTGGC TGACGGGGCC CTTCAACCTC ACCAGCCACT TCACCCTCTT 
    CCTCGACCAC GGCGCCGAGA TCCTCGCGTC TCAGAACTTG GAAGATTGGC 
    CTCTGATAGC TCCTCTGCCA TCCTACGGAA GAGGAAGGGA CGAACCAGGC 
    CCAAGATACA GCAATTTCAT TGCTGGATCC AATCTCACAG ATGTCATCAT 
    CACTGGTAGG AATGGAACGA TCAACGGCCA GGGCCAAGTC TGGTGGGACA 
    AGTTCCACGC CAAGGAACTC ACCTACACTC GCGGTTACCT GCTCGAGCTC 
    CTCTACTCTA ACAATATCAT CATCTCTAAT GTCACCTTCG TCGACTCGCC 
    GTCATGGAAT CTCCATCCCA CCTACTGCAC CAATGTGACC ATCAGCGGCA 
    TCACCATTCT AGCACCTCTC AACTCGCCCA ACACCGATGG AATCGACCCA 
    GATTCTTCCT CCCATGTCAA GATCGAGGAC AGCTACATCG TGTCCGGCGA 
    CGACTGCATC GCCGTGAAGA GCGGCTGGGA CCAGTACGGC ATCAAGTTCA 
    ACATGCCGAG CCAGCACATC CTCATCAGGA GGCTCACCTG CATCTCCCCG 
    ACGAGCGCCA TGATCGCGCT CGGCAGCGAG ATGTCCGGCG GCATCCGCGA 
    CGTGCGCGCC GTGGACAACG TCGCCATCGA CACCGAGTCG GCCGTCAGGA 
    TCAAGTCCGG CGTGGGGCGC GGCGGCTACG TCAAGGACGT GTTCGTCCGC 
    GGCCTCAGCC TCCACACCAT GAAGTGGGTG TTCTGGATGA CCGGCAACTA 
    CGGCCAGCAC CCGGACAACT CCTCCGACCC CAACGCTCTG CCGGAGGTCA 
    CCGGCATCAA CTACAGCGAC GTGTTCGCGG AGAACGTCAC CATGGCCGGC 
    AGGATGGAGG GGATTCCCAA CGACCCCTAC ACTGGCATCT GCATGTCCAA 
    CGTCACCGCG CAGCTCGCGC CGGACGCCAA GAAGCTGCAA TGGAACTGCA 
    CCGATGTCAA GGGTGTCGCC TCCGACGTCT CGCCGGTGCC GTGCCCGGAG 
    CTCGGGGCGG CGGGCAAGCC ATGCGCCTTC CCTGAAGAAG AGCTCGTCAT 
    CGGTCCGCCT GAATTGCCAA CGTGTAGCTA CTGAAATACT GATATAGGAT 
    GATAGTATGG TGTGGGTAAT GGCCTGGGCT ATGAGATGCT TGGGACCAAA 
    GAGATATATA TGATGTGGTT TAGTGAGTAA AGTTAAGCAG TTTGAAAATG 
    CTGCCGGATA ATCTCTTTAC ACCCAATCC

    Gene models with high sequence identity

    1. AT3G48950.1 [+] show detail - Pectin lyase-like superfamily protein
      E-value: 3e-160; Score: 562.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pectin lyase fold/virulence factor 1e-87
    HMMSmart Parallel beta-helix repeat 60
    HMMSmart Parallel beta-helix repeat 30
    Gene3D Pectin lyase fold 1.9e-95
    HMMPfam Glycoside hydrolase, family 28 1.4e-34

    See the detailed result >

    AT3G48950.1

    Model type
    Protein coding
    Short Description
    Pectin lyase-like superfamily protein
    Computational Description
    Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G23900.1); Has 4179 Blast hits to 4160 proteins in 504 species: Archae - 6; Bacteria - 1499; Metazoa - 14; Fungi - 1097; Plants - 1422; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR