K33301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33301

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33301

Determination of introduced cDNA(s)

  • J023008E16 - Rice Full-length cDNAs - Original: J023008E16

    full reading [+] show sequence

    Nucleotide sequence: J023008E16 - full reading 
    GCTCTTCTTC TCCCGGATCT CGCGCGCCAC GACCCTCCTC CCCCTTCCAG 
    AAGCTTCTCG AAGCTCCGTT CCTCACCACC CCAACCCAAT CCCCACTCCC 
    CACTCCCTCC GCGCGGATGA GCGGCGGCGG CGGCGGCTCG GGCCCCCTCC 
    CCTACTCGAT GCGCGATGTG GACGGCCGCG GCGCCTACAA CAACGCCAAG 
    TTCCGCCACC GATCTCGCCT CAAGATGGCC TCTCAGGCTC TGTTTACCAA 
    TAGCAGCAAG TACCAATGTG GAAAGTTCAC TGTTGGAAAA TTTTTGAGTC 
    TTTTAATGGT TTCTGGCGTA ATATACTTAC TTGTGCACAA AAGTTCGGAT 
    GGTTTTGTAT CCGGTGAGCT CCATGAAAAA GTAGGGAATA CACATACCAA 
    GAAAGATTTT CCCAAAATTC GTACATTTTG GAGAAAGCCA CCAAGGCTGC 
    CGCCACGTCT TCCTCCAAAT GAAATCTATA GAAACAATTC ATTGCTTCTA 
    CAGTCTCCTC AATCTGAATG GACACTCAGA CAGAAGAAAG TTAAAGAAGC 
    ATTTGAACAT GCATGGTCTG GCTATCGAAA TTATGCAATG GGTTATGATG 
    AGCTTATGCC TTTAACCCGC CGAGGTATAG ATGGACTAGG AGGTCTAGGC 
    GCTACTGTTG TAGATTCTTT AGACACTGCA ATAATAATGG GTGCTGATGA 
    TGTTGTTTCC GAAGCATCAA AATGGATTGA AGATAATCTC ATGAAAAAGT 
    TAAGTGAGAA AGGGCAGGTC AATCTATTTG AAACTACTAT CCGTGTCTTG 
    GGAGGGCTTC TTAGTGCCTA TCACTTGAGT GGTGGTGACA AAGCAAGAGG 
    TGACTCTGGG ATACCAATGA CATCTAAAAG GGCTAATCCG GAGCGTCTTT 
    TGGAAGTTTC AAAGGACTTG GCAGACAGAT TATTGTTAGC CTTTACATCA 
    AGCCCAACTG CTATACCTTT AAGTGATGTT GTTCTTCGAG ATCGAACTGC 
    ACATGCAGCC CCTGATGGTT TAAGCAGTAC CTCTGAGGCT ACAACATTGC 
    AGCTGGAGTA CAGTTACCTT AGCACAATAT CAGGAGATCC AAAGTATGAC 
    TTAGAGGCAA TGAAAGTGTT AGAGCATATG CGAACACTCC CAACAGTGGA 
    GGGTTTGGTT CCTATTTACA TCAATCCCTC CTCTGGTCAA TTTAGTGGAG 
    AAAATATTCG ATTAGGATCT CGTGGTGACA GTTACTATGA ATACCTATTG 
    AAAGTATGGG TTCAGCAAGA AAGATATCGT GACACTAGTT TGAAGTATCT 
    ATTTGAAATG TATACAGAAG CAATGAAAGG GGTCAAGCAT CTTCTTGTTC 
    GAAAAACTAT TCCAAATGGG CTGGTCTTCG TTGGGGAGCT CCCCTATGGA 
    CGAAATAGTG GTTTTAGCCC TAAAATGGAT CACCTGGTGT GTTTTCTTCC 
    TGGTACCCTT GCTCTGGGTG CAACGAAGGG TATAACCAAG AAAAAAGCTC 
    TTGAAAATCA TTTATTGACT GCGGAAGACA TAGACAATCT GCAGCTTGCT 
    GAAGATTTGG CCAAAACTTG TGTTGAAATG TACTTTGTGA CATCTACTGG 
    ACTTGCTCCT GAAATTGCTT ATTTTCACAT TGAGGGTAAT TCTGAGGGAG 
    GACCTGATGG TGGGAACAAA AGTTCTCAAT ATGTTAATGA TATCATAATC 
    AAACCTCTGG ATCGTCACAA TCTTTTACGC CCAGAGACTG TAGAATCACT 
    ATTTGTTTTA TATAGAATCA CAGAGGATCC GAAGTATAGG GAATGGGGTT 
    GGCAGATTTT TCAGGCTTTT GAGAAGTATA CAAGAGTTGA TTCTGGTGGC 
    TATACTTCAT TGGATGATGT CACAAGCTTG CCCCCACCTA GGAGAGACAA 
    AATGGAAACT TTCTTCCTTG GAGAAACACT GAAATACTTG TATTTGCTGT 
    TTGGTGAAAG CAATATTCTT CCATTAGATA AGTATGTATT CAACACAGAG 
    GCCCATCCAC TTCCAATCAT TCAGTCTGCA CAACAGATCT CTCATTCGGT 
    ATAGTTTCCA AGTGTTTTAG TGGGTGTAGT TCCTCTACTA TCATGTGAAA 
    AGTGTACTAC CATGAGAAAA TTTTACCAAA CAGATAAAGT GAGAAAATAG 
    TTACGCAGAC AAAATTATTG GGACAATGAG AGAAACATAC TAGCCTTATA 
    GATGCACATG CTCCCGTTGC ATGAGCTTGA AGCAGCATCA GAGCCGTTCT 
    TGGTAGCAAC CTCATGGAGT TGTCAGCTTG AAGCTGCAGT GGCATCATTA 
    TTAGAAGCAA GCTCGTGGAT GGAGTTATCG TCATAGATTT GGAGATTGTA 
    CTTGTATTTA TGGGAAGGTC ATGAAACTAC TCTGATCTGC TGAAAACATA 
    CAATTTTGAA TTAGCTTGTG ATTACACTGA CATTTGTCTT CCAAGAAATC 
    TTCAATCCTT GTGTCAGACA TCCCATCATG TTCACAACTT GCTCCCTGCT 
    TACCTGGTGA GTTCAACTAG ATTTGTAAGC TTCTTATCAT CTCCAGTTGC 
    TGTTCATTGA CAGCATTTTG CATGGTTCAT GTTTTTGGCG TGTTTGTGTT 
    ATGGTAGTGC TCTACTGTAA GCCTGTAGCA AAATCTCCTA AAAGAACATT 
    GATTTTGAAA ATGTCATAAT ATAGTCAAAG TTCAAGGTGA CTATGATTGG 
    C

    Gene models with high sequence identity

    1. AT1G30000.1 [+] show detail - alpha-mannosidase 3
      E-value: 0; Score: 783.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, family 47 1.7e-154
    superfamily Glycoside hydrolase, family 47 8.6e-161
    HMMPfam Glycoside hydrolase, family 47 1.1e-151
    HMMPanther ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARID 8.2e-242
    HMMPanther Glycoside hydrolase, family 47 8.2e-242
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64
    FPrintScan Glycoside hydrolase, family 47 5e-64

    See the detailed result >

    AT1G30000.1

    Model type
    Protein coding
    Short Description
    alpha-mannosidase 3
    Computational Description
    alpha-mannosidase 3 (MNS3); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: alpha-mannosidase 2 (TAIR:AT3G21160.1); Has 2086 Blast hits to 1880 proteins in 193 species: Archae - 0; Bacteria - 12; Metazoa - 798; Fungi - 875; Plants - 191; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR