K33310

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33310

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33310

Determination of introduced cDNA(s)

  • J023033I19 - Rice Full-length cDNAs - Original: J023033I19

    full reading [+] show sequence

    Nucleotide sequence: J023033I19 - full reading 
    GAGTACTCAC AGATAGATAG TGAGATCTGA ACTGTGAAAA CCACAAGGTG 
    ATAGGTATCT AAATAGTGAT CTGAGCTGAG CTTCCTTGCA TCAAAGTCAA 
    GCTAGCGGCT CAGATCGATC TCTTTCGGTT CTTCAGAAAC TTGGTGTCAA 
    ATGGGAGGCT CATTGGAGTA CTTGGCCGGC CTGTTCAGTT GTGGCGATCA 
    TCACCATGGC CACAAGAACA GCAAGAGGAG GCAGCTGCAG ACTGTGGAGC 
    TGAAGGTCAG GATGGACTGT GATGGGTGCG AGCTCAAGGT CAAGAACGCC 
    CTCTCCACCT TGAAAGGCGT CGAGTCGGTG AAGATTAACA GGAAGCAGCA 
    GAAGGTGACG GTGAGCGGGT ACGTGGAGGC CAGCAAGGTG CTGAGGAAGG 
    CGCAGTCGAC GGGGAAGAAG TCCGAGCTGT GGCCGTACGT GCCGTACAGC 
    GCGGCGAGCC AGCCGTACGT CGCCGCCGCC GCCTATGACA GGCGGGCCCC 
    ACCCGGCCAC GTCAGGAACG TGGAGGCCTC TTCCGCCGCC TACGTGTCCG 
    GCGGCGGCAG GACGGAGGAG CGGCTCACCA ACCTGTTCAA CGACGAGGAC 
    CCCAACGCAT GCTCCCTCAT GTGATGAAAA TGCAAAAGAG ATCAGAGTAT 
    CTGAGTAGCT AGATTGAAGC TTTCAATTTT AAATTCAGAG GTTTAAATTT 
    GTACTAGCTT TAATTTTGGC TGTCTGAGCG CAGTGACCGA ATGAGTTTGC 
    TTGTTTTCGG TAGTTGATTC TAGTCTAGAG TAAATTCCAT AAAACTACAA 
    GTATTTTAAG GAGATGACTA GGGATCGGAC GTCCGATCCC AGTTAAAATT 
    TCAGACAATG TTTCATCACA TAAAAGAAAA TGTTGCACAT GTTTCACCAC 
    TCATTAAAAG ATGTTTCAAT AAACTTGTTT CAGATGTCCG ATCACAGTC

    Gene models with high sequence identity

    1. AT4G39700.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 2e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 9.5e-13
    superfamily Heavy metal transport/detoxification protein 8.2e-17
    HMMPfam Heavy metal transport/detoxification protein 4e-14
    HMMPanther COPPER CHAPERONE-RELATED 5.4e-71
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 5.4e-71
    ProfileScan Heavy metal transport/detoxification protein 11.227

    See the detailed result >

    AT4G39700.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G22990.1); Has 1218 Blast hits to 1176 proteins in 83 species: Archae - 0; Bacteria - 23; Metazoa - 6; Fungi - 46; Plants - 1141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR