K33316

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33316

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33316

Determination of introduced cDNA(s)

  • J013151H06 - Rice Full-length cDNAs - Original: J013151H06

    full reading [+] show sequence

    Nucleotide sequence: J013151H06 - full reading 
    GGTTTTCTCC CCTCCCACCG TCCCAACTCC CACGTCCGGC TCGGCTCGGG 
    CCTCTCCGTG CCAGAGAGTT TCACTCCTCG CGGAGAAGGA AAAACCGGAG 
    GCGCGCGCGC AGTCGTGGCC GGGGTTGGGA AGATCCGAGA GGCAAGGGGC 
    AAGGGCGGCG TGCGGGTCTG CAGGATCAGG ATCCCGAAAA GCTAGCCCGC 
    GGCGAAGTAA TAATAACTGC TCCTCTGAAT CTCTCCGATC CTCTCGAACC 
    ACGAGAAGCT CAGCAGTTTC GGCTCCGCGC GCCGCCTGCC TCTCGGTCGA 
    CAGCACAGTA AATTCCGCCG GCGCGTGGTG CAGCTTTGCC GGCAGCGTGC 
    CGCTCCCACG GCCATTTACT TCGCCTCCTC TCCTGAGGCA GGCGCGCGGC 
    TGGAGACGGG AAGACCGGGG AGGACAGGAG GATGGTGCCG GCCGGCGACC 
    AGGCGGAGGA GGCCATCGTG GCGGACGCCG GGAAGGAGGA GGCGGAGGTG 
    CGCGCGGCCA TGGGCGTCGA GCAGGACGGC AAGTTCAGCA TGACGAGCCT 
    CCTGTGGCAC GGCGGCTCCG TCTGGGACGC CTGGTTCAGC TGCGCCTCCA 
    ACCAGGTACG ACCAACCACG AACGACCTCG TCATGCCTCT CGCTCACATT 
    TCGTTTGGAA TTTTGCAGGT GGCGCAGGTG CTCCTGACGC TGCCGTACTC 
    CTTCTCGCAG CTCGGGATGC TCTCGGGCCT GCTGCTGCAG GTGTTCTACG 
    GCCTCATGGG CAGCTGGACC GCCTACCTCA TCAGCGTCCT CTACGTCGAG 
    TACCGCGCCC GCAAGGAGAA GGAAGGCGTC AGCTTCAAGA ACCACGTCAT 
    CCAGTGGTTC GAAGTTCTTG ATGGGCTCTT GGGCCCGTAC TGGAAGGCGG 
    CCGGCCTCGC CTTCAACTGC ACCTTCCTGC TCTTCGGCTC CGTCATCCAG 
    CTGATCGCCT GTGCAAGTAA CATATACTAC ATCAACGACC GGCTGGACAA 
    GAGGACATGG ACGTACATAT TCGGGGCGTG CTGCTCCACC ACGGTGTTCA 
    TCCCCTCCTT CCACAACTAC CGCATCTGGT CCTTCCTTGG CCTCGGCATG 
    ACCACCTACA CCGCCTGGTA CCTCGCCATC GCCGCCGCCG TCCACGGCCA 
    GGTCGACGGC GTGACGCACT CGGGCCCGAG CAAGATGGTG CTCTACTTCA 
    CTGGCGCCAC CAACATCCTC TACACTTTCG GCGGACACGC CGTCACTGTA 
    GAGATCATGC ACGCGATGTG GAAGCCGCAG AAGTTCAAGT ACATCTACCT 
    GGTGGCGACG CTGTACGTGT TCACGCTGAC GCTGCCGTCG GCGTCGGCCA 
    TGTACTGGGC GTTCGGCGAC GCGCTGCTGA CGCACTCGAA CGCCTTCTCG 
    CTGCTGCCGC GGTCCGGGTG GCGCGACGCG GCGGTGATCC TGATGCTGAT 
    CCACCAGTTC ATCACGTTCG GGTTCGCGTG CACCCCGCTC TACTTCGTGT 
    GGGAGAAGGC GATCGGCATG CACGGCACCC GCAGCGTCCT CACCCGCGCG 
    CTCGCCCGCC TCCCCATCGT CGTGCCCATC TGGTTCCTCG CCATCATCTT 
    CCCCTTCTTC GGCCCCATCA ACTCCGCCGT CGGCGCGCTC CTCGTCAGCT 
    TCACCGTCTA CATCATCCCC TCCCTCTCCC ACATCCTCAC GTACCGCTCC 
    GCCTCCGCCA GATTGAATGC GGCGGAGAAG CCGCCGCCGT TCCTGCCGAG 
    CTGGAGCGGG ATGTTCGTGG TGAACGTGTT CGTGGTGGCG TGGGTGCTGG 
    TGGTCGGGTT CGGCCTCGGC GGCTGGGCCA GCGTCACCAA CTTCATCAAG 
    CAGATCGACA CGTTCGGGCT CTTCGCCAAG TGCTACCAGT GCCCACCCAG 
    GGCGCACGCC GGGGCGCCCC TGCCGGCTCC GCCGCGCCAC TAGCCAAAAA 
    AACCGAGTGC CACGCCGCGA CGGCGCGACG CCGCGCGCGG GCCGGTGACA 
    AAAGGAGCTA GCTTCCCCGC GGGCGTCTTG CCTTTGTGTA GTAGGACAGC 
    AGGTCAGCAG CATACATGGT AGGACAGCGC GTGGGTCACT GACTAGATTT 
    ACCGCCCTGC AGGGGCTTCC CTATGCTGCG GAGTCTTCAG TTCATGTGTG 
    TTGTTGGCAA CTTTGCGTCG TCCTCTTTTG TTTGGGAGTT GGATGTGAAC 
    TTGGTCGTAA TTTGTAGGTT CTTCTGTTCA TGTTACATGC CAATATAAAA 
    CGCCATATTT GTTC

    Gene models with high sequence identity

    1. AT2G38120.1 [+] show detail - Transmembrane amino acid transporter family protein
      E-value: 0; Score: 738.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 2.9e-289
    HMMPanther AMINO ACID TRANSPORTER 2.9e-289
    HMMPfam Amino acid transporter, transmembrane 1.7e-69

    See the detailed result >

    AT2G38120.1

    Model type
    Protein coding
    Short Description
    Transmembrane amino acid transporter family protein
    Curator Summary
    Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
    Computational Description
    AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR