K33339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Original: K33339

Determination of introduced cDNA(s)

  • J023067P18 - Rice Full-length cDNAs - Original: J023067P18

    full reading [+] show sequence

    Nucleotide sequence: J023067P18 - full reading 
    GAGAGTCCCA TTTGCCCCCT TTCTCCCTGT CGAGCACCGC TTGGCCGCCG 
    TGCGGCGAAA CCCTAGCGAT TGTAGCGGCC GGAATCAGAG GCGGCGGAAG 
    CCATGGCGGA CGACGACTAC AACGACATGG ACATGGGGTA TGAGGATGAG 
    CCACCAGAAC CTGAGATTGA GGAAGGGGCT GAAGAGGAAC CTGAGAATAA 
    CGAGGATGGC CCTGATGAGG TTGTAGGGGC AGAGGCTGAA GATAAGGAAC 
    AAGAAAAAAC TCAGCGCCCA CGCAAAACGT CAAAGTATAT GACAAAGTAT 
    GAGCGTGCCC GCATCCTGGG TACACGTGCA TTACAGATAA GCATGAATGC 
    TCCAGTTATG GTTGAGCTTG AGGGAGAAAC TGATCCTCTT GAGATTGCCA 
    TGAAAGAGCT GAGAGCACGC AAGATCCCAT TCACAATTAG GCGGTACTTA 
    CCTGACGGAA GCTATGAGGA CTGGGGCGTT GACGAGCTTA TTGTGGAGGA 
    CTCCTGGAAA CGCCAGGTTG GAGGCGGCTA AGCTGTGACT GAGGCTACTC 
    AAAACGAACA GCAATGTGCT GCAAGTTGAC TTTGCCCTTG TAGTAATATG 
    GTCTGTGCAA CTCCATTATG ACTGGATGCT GTATCAGTGA ACTGGCGTGA 
    TGATGGCATG CCATGTTGCC TTGACATGTA TGCCTTCTTT CCGCAGTGTA 
    ACTGTGACTG AAATTTGCAT GGTTGCATCA GTTTGCTTGG ACCATTTGCA 
    GACTTTGTCC TGTGAATGTT CAAGGCTTAA TGCTTGGTTT TTTTTTTTCT 
    TGGCCTAATT TGGTAGTCGT CTAGCAGACA TGAGCGACAT TTTTGCAGTA 
    CGTAGACATC AGACAAACGG GCGGATGCCT GGAATTGTGC TGGAACTGAA 
    CTTAAATTCC GGTTGATTCG TGTTCTGGGT CCATTTCCAC TTTTCCAGTA 
    TAAGTATCAA ACTCTGAACT GAAGGCTATA TAGATAAATC

    Gene models with high sequence identity

    1. AT5G51940.1 [+] show detail - RNA polymerase Rpb6
      E-value: 5e-46; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D RNA polymerase subunit, RPB6/omega 1.6e-44
    PatternScan DNA-directed RNA polymerase, 14-18kDa subunit, conserved site 0
    HMMPfam RNA polymerase Rpb6 2e-23
    superfamily RNA polymerase Rpb6 9.9e-50
    HAMAP DNA-directed RNA polymerase, subunit K, subgroup 18.637
    HMMPanther DNA-DIRECTED RNA POLYMERASE SUBUNIT RPB6 1.7e-70
    HMMPanther DNA-directed RNA polymerase, 14-18kDa subunit 1.7e-70

    See the detailed result >

    AT5G51940.1

    Model type
    Protein coding
    Short Description
    RNA polymerase Rpb6
    Curator Summary
    One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.
    Computational Description
    NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR