K33341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33341

Determination of introduced cDNA(s)

  • J023107E20 - Rice Full-length cDNAs - Original: J023107E20

    full reading [+] show sequence

    Nucleotide sequence: J023107E20 - full reading
    GGTGTGAGCG CGGGAGCACC TCTCCCGACG AGCCTTCCCT TCTCCTCCTC 
    GCCTTCGCGT CAGCCCGGCA TGGGGTTCCC GGTCTGCTGC TACTCCGAGC
    TGCTGCTCCC CAAGCAGCTG CTCCACCTCC TCCTGCTGCT CGGCTACATC
    CGCCGCTTCC TCCTCTGGGC GTTCCACGCC GTCGGCCTCG GGGACCTGCT
    GGATCTCGGG GACGAGCAGC AGGCGGTGCT GCAGGACCAC GCGCGCGAGC
    ACCGCGCGCC GGCGCAGGCG CTGCCGCCAC AGCAGCAGCA CCGCCGCGCC
    GAGTTCCGGA CGGTGCCGGC GATGGTCATC GAGGAGGTTC TGCCGGTGGT
    GCGGTTCGAC GAGCTGGTGG CCGCGGCCCC GGCGGTTTGC GGCGGCGGGG
    ACTGCGCGGT GTGCCTCAGC GGCATCGGCG GCGGCGACGA GGTGCGCAGG
    CTCAGCAATT GCCGCCACGT GTTCCACCGG GGCTGCCTGG ACCGCTGGAT
    GGAGCACGAC GACCAGCGCA CCTGCCCGCT CTGCCGCGCG CCGCTCATCC
    CCGACGAGAT GGCCAGCGCG CTCTGGGCCG CCGCCGGCGT GCCCGACGCC
    TCCGACTTCG ACTTCTCCTA CTTCGGCGCG CCCCTCACGC CGATGCCCAC
    GCCGACTCTG CTACGGCCGC ACGAGCTGCT GCTCACTGGC CTTGGCGGCT
    ACCAGTAACC AGTGAACCGC CGCTGTTGGT TCACGGAGTT GGCAATATCC
    ACCTACTGCA CAGCAGGGCA CCGGCGACCC GGAATGCGCA GTTTTTACAA
    CGACTGAATT GGTCGTCGTG TTCGGGGAAG ACCAAGAACA GGAGGCGCCT
    TCAACTGTAC ATAGGCAAAA ATGAGTAAAG CAAACCCCCC GAAAAAGGCT
    AGATGATTAG TAGATTTTTA TTTTTGTTTT TGTTTTTGTA CAGAAGATTC
    CATCTTCCAG GTTTGAGAAG TAGTGAATCT TTGTGCTGAT T

    Gene models with high sequence identity

    1. AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
      E-value: 3e-24; Score: 109.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2.4e-15
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 5.4e-11
    ProfileScan Zinc finger, RING-type 12.622
    Gene3D no description 2.2e-11
    HMMPfam Zinc finger, C3HC4 RING-type 1e-08
    HMMSmart Zinc finger, RING-CH-type 0.0016
    HMMSmart Zinc finger, RING-type 5.2e-07

    See the detailed result >

    AT3G61460.1

    Model type
    Protein coding
    Short Description
    brassinosteroid-responsive RING-H2
    Curator Summary
    Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
    Computational Description
    brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR