K33345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33345

Determination of introduced cDNA(s)

  • J013102I07 - Rice Full-length cDNAs - Original: J013102I07

    full reading [+] show sequence

    Nucleotide sequence: J013102I07 - full reading
    GGTCTACGTC GACGGCAGCT TACTTTGAGA GCCTTGGTAG GATGAGCTCC 
    GCGGCCATGA AGCTCGCCGT GGTGGCCGCG CTCATCTCGG CCGCCGCCGT
    GGGCGCCCGC GCCTGCCTCG ACGTCGGCTT CTACGACACG ACGTGCCCGA
    CGGCGGAGAC GCTCATACAG CAGGTCGTCG CCGCCGCCTT CCGCAACGAC
    TCCGGCGTCG CGCCGGCCAT GATCCGCATG CATTTCCACG ACTGCTTCGT
    CAGGGGCTGC GACGGCTCGG TGCTGATCGA CACCGTGCCG GGGTCGACGA
    CGAGGGCGGA GAAGGACGCC GCGCCAAACA ACCCGAGCCT CCGGTTCTTC
    GACGTGATCG ACCGCGCCAA GTCGGCCGTC GAGGCGGCGT GCCCGGGCGT
    CGTCTCCTGC GCCGACGTCG TCGCCTTCAT GGCGCGGGAC GGCGTCGTGC
    TGTCCGGCGG CCTCGGCTAC CAGGTGCCCG CGGGGCGGCG CGACGGCCGG
    ACCTCCCTCG AGGACGACGC GCTCAACTTC CTGCCGCCGC CAACGTCCAC
    CGCCGCCGAC CTCGTCGCCA ACTTCACCGC CAAGAACCTC ACCGCCGAGG
    ACATGGTCGT CCTCTCCGGC GCCCACACCA TCGGCGTCTC CCACTGCGAC
    TCCTTCACCA ATCGCATCTA CAACTTCCCC AACACAACCG ATGGAATTGA
    TCCGTCGTTG AGCAAGGCGT ACGCGTTCTT GCTGAAGGGC ATCTGTCCGC
    CGAACAGCAA CCAGACGTTC CCGACGACGA CCACCTTCAT GGACATCCTG
    ACGCCGACCA AGTTCGACAA CAGGTACTAC GTCGGGCTGA CAAACAACCT
    CGGCCTCTTC CAGTCGGACG CGGCGCTGCT GACGGACGCC GCGCTCAAGG
    CCACGGTGAA CTCCTTCGTG CGCAGCGAGG CGACGTTCCG GCTCAAGTTC
    GCCAGGGCCA TGATCAAGAT GGGGCAGATC GGCGTGCTGT CCGGGACGCA
    GGGCGAGATC AGGCTCAACT GCAGGGTCGT CAACCCTGTC AATGTCACTG
    CTACTGCAGC TGATGATCAC CACCTTACTT CCTCTTCCTC CTCTTCTTCA
    GATGAAGTGG CTGCAAGCTA ATTAATTAAC TGATTACCAC TGCTTGTTAG
    TAGGTGTGCA TGCACAGACA GTGATTGAGA TGTGTGTGAA GTTCAGTGTG
    ATGAGATGAT TAGATGCTTC AATTGTTTGT TGCAGTTACA GTGATTGAGA
    GACATCAGAT CTTGTTTACC TGATGTAGGT GTTGGTGGTT GATACTGTCA
    CCATCTTGTG CTTGTCAGTC TGAAAAATAA ATTGTTGCAT CCAGCATGCA
    CTGGTGCC

    Gene models with high sequence identity

    1. AT1G05260.1 [+] show detail - Peroxidase superfamily protein
      E-value: 8e-65; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.672
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 1.4e-108
    Gene3D no description 1.6e-55
    HMMPfam Haem peroxidase, plant/fungal/bacterial 4e-77

    See the detailed result >

    AT1G05260.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
    Computational Description
    RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR