K33410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33410

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33410

Determination of introduced cDNA(s)

  • J023030N01 - Rice Full-length cDNAs - Original: J023030N01

    full reading [+] show sequence

    Nucleotide sequence: J023030N01 - full reading 
    GACGCGTGAG TTCGTGACGC GTCACGCCCC GCGGCCTTCC CCTCCCAAAA 
    AGCGGCAGGA CGCAACCTGA TCCCCATCCC CCGAGCAAGC AAAGCGGAGG 
    AACGCGATGG CGTCGGCGCT GCTGAGGAAG GCGACGGTAG GCGGCTCCGC 
    GGCGGCGGCG GCGGCGAGGT GGGCTTCCAG GGGGCTCGCG TCGGTGGGCT 
    CCGGCTCCGA CATCGTCTCG GCGGCGCCCG GCGTGTCGCT GCAGAAGGCC 
    CGCTCCTGGG ACGAGGGCGT CGCCACCAAC TTCTCCACCA CCCCTCTCAA 
    GGACATCTTC CATGGGAAGA AAGTGGTCAT CTTCGGCCTG CCTGGTGCAT 
    ACACAGGAGT CTGTTCACAG GCACACGTCC CTAGTTATAA AAATAACATT 
    GACAAGTTGA AAACAAAAGG GGTTGACTCT GTTATCTGTG TCTCTGTGAA 
    TGACCCTTAT GCCCTGAATG GATGGGCAGA AAAGCTACAG GCAAAAGATG 
    CTATTGAATT TTATGGTGAT TTTGATGGGA GTTTCCACAA AAGCTTGGAT 
    TTGGAAGTAG ACCTCTCTGC TGCTTTGCTT GGCCGCCGTT CCCACAGGTG 
    GTCAGCCTTT GTTGACGATG GGAAGATCAA GGCTTTCAAT GTTGAGGTAG 
    CTCCTTCTGA CTTCAAGGTT TCTGGTGCCG AGGTGATCTT GGACCAAATC 
    TGATCCGAGT AACGAAATTC TGTCGTTGTT TGTTTTCTCA TGCAGCATGC 
    ATGCTTTTGC TGTAGTAAAT AAACGAAAAC TCGACTACTC GAGTATCCAT 
    GCAAAGATGT TTGTAGTCTG CCTTGCTACG CCCAGAATAT TTGTTTTCCT 
    GTTACAAATC AGCTTGCCGG TCAACATGTT TGTCAGC

    Gene models with high sequence identity

    1. AT3G06050.1 [+] show detail - peroxiredoxin IIF
      E-value: 8e-77; Score: 283.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 10.245
    HMMPanther PEROXIREDOXIN 5.7e-90
    HMMPanther PEROXIREDOXIN-5 5.7e-90
    Gene3D Thioredoxin fold 5e-45
    superfamily Thioredoxin-like fold 6.7e-32
    HMMPfam Redoxin 1.1e-32

    See the detailed result >

    AT3G06050.1

    Model type
    Protein coding
    Short Description
    peroxiredoxin IIF
    Curator Summary
    Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.
    Computational Description
    peroxiredoxin IIF (PRXIIF); FUNCTIONS IN: peroxidase activity, antioxidant activity; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G60740.1); Has 3925 Blast hits to 3925 proteins in 881 species: Archae - 6; Bacteria - 1549; Metazoa - 168; Fungi - 305; Plants - 221; Viruses - 0; Other Eukaryotes - 1676 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR