K33425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Cauline leaf::Number::many)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	late (PATO:0000693) (Adult plant::Flowering::late)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33425

Determination of introduced cDNA(s)

J013107K09 - Rice Full-length cDNAs - Original: J013107K09

full reading [+] show sequence

GGTTGTGCAC AGCTCTTGTT CTCCATTAAT CCAGCCGTGC GTGCAGTTGA 
GGTCCACCTG CTGCTGCTCT CTGTCTGCTC CCATCGAACA AATCAAGAAC 
CACCCTCTCC ACTCTCCAAT CCAATCTCGA ATAGGAAGAA GGATGCTTGG 
TTTTGCGCCG GCACCAGGCC GGCCGCTCTT CGTGCTCTTC GGTTCCTCCA 
TCGTCCAGTT CAGCTTCAGC AATGGCGGAT GGGGCGCTGC CCTTGCAGAC 
ATCTACGCTC GCAAGGCTGA TATCCTTCTC AGAGGGTATA TTGGTTGGAA 
CTCAAGGCGC GCCCTTCAAG TCATTGACAA AATTTTTCCC AAGGATTCGC 
CCGTGCAACC TTCTTTGGTA ATAGTTTACT TTGGTGGCAA TGATTCGGTT 
GCTGCCCATT CATCCGGCCT TGGACCTCAT GTGCCACTAG AGGAGTACAT 
AGACAACATG AGAAAGATCG CAGACCACCT GAAGAGCTTG TCTGAGAAGA 
CCCGTGTCAT CTTCCTCAGC TGCCCACCAC TTAACGAGGA GACGCTCCGA 
AAATCAACCA GCACTGTCCT GAGTGAGATA GTGCGGACAA ACGAAACTTG 
CCGCCTATAC TCCGAAGCCT GTGTATCTCT ATGCAAAGAG ATGGACCTGA 
AGGTGGTTGA TCTTTGGAAT GCTATGCAGA AACGGGACGA CTGGGCGACG 
GCCTGCTTCA CGGATGGGCT TCATCTGTCT GAAGAAGGGA GCAAGATTGT 
TGTGGAAGAG ATCCTGAGGA TCCTCAAGGA GGCAGAGTGG GATCCATGCC 
TGCACTGGAA GGCGATGCCG ACAGAGTTTG GGGAGGACTC ACCCTATGAT 
CTCGTCTCCT CCAGCGGCCA ATCCACCGTC AACCCCTCCG ACTGGACCTT 
CCACAGGACT ATCCAATGGG ACTGACCTTC CATTCGTCTC AATCTCAGTA 
TCTCATGATG GAGCATATAC ATGCATGCTC CAACGTGCAA CATTACATGC 
ATGATTCATA ATTAAGATCC CCTTCGGTCT TACTATATAT GTAGGGGTCT 
AATGCTAGCT GATGACGAGG GGTCATGGAT TAGGCTTCAG CTCGATCGAG 
CTGAAAAAAA ATCAGATTTA GGATGATATT AACTGCTTTG CTCCCTGCCT 
GCTATATATC ATAAGTGAGA CAATGCACAT GATTATCTCG CTATATACTA 
TGTGACTCAT TTCGCT

Gene models with high sequence identity

AT3G11210.1 [+] show detail - SGNH hydrolase-type esterase superfamily protein
E-value: 1e-104; Score: 376.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Gene3D	Esterase, SGNH hydrolase-type, subgroup	2e-12
HMMPfam	Lipase, GDSL	5.2e-28
superfamily	Esterase, SGNH hydrolase-type	4.3e-37

See the detailed result >

AT3G11210.1

Model type: Protein coding
Short Description: SGNH hydrolase-type esterase superfamily protein
Computational Description: SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR