K33425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33425

Determination of introduced cDNA(s)

  • J013107K09 - Rice Full-length cDNAs - Original: J013107K09

    full reading [+] show sequence

    Nucleotide sequence: J013107K09 - full reading
    GGTTGTGCAC AGCTCTTGTT CTCCATTAAT CCAGCCGTGC GTGCAGTTGA 
    GGTCCACCTG CTGCTGCTCT CTGTCTGCTC CCATCGAACA AATCAAGAAC
    CACCCTCTCC ACTCTCCAAT CCAATCTCGA ATAGGAAGAA GGATGCTTGG
    TTTTGCGCCG GCACCAGGCC GGCCGCTCTT CGTGCTCTTC GGTTCCTCCA
    TCGTCCAGTT CAGCTTCAGC AATGGCGGAT GGGGCGCTGC CCTTGCAGAC
    ATCTACGCTC GCAAGGCTGA TATCCTTCTC AGAGGGTATA TTGGTTGGAA
    CTCAAGGCGC GCCCTTCAAG TCATTGACAA AATTTTTCCC AAGGATTCGC
    CCGTGCAACC TTCTTTGGTA ATAGTTTACT TTGGTGGCAA TGATTCGGTT
    GCTGCCCATT CATCCGGCCT TGGACCTCAT GTGCCACTAG AGGAGTACAT
    AGACAACATG AGAAAGATCG CAGACCACCT GAAGAGCTTG TCTGAGAAGA
    CCCGTGTCAT CTTCCTCAGC TGCCCACCAC TTAACGAGGA GACGCTCCGA
    AAATCAACCA GCACTGTCCT GAGTGAGATA GTGCGGACAA ACGAAACTTG
    CCGCCTATAC TCCGAAGCCT GTGTATCTCT ATGCAAAGAG ATGGACCTGA
    AGGTGGTTGA TCTTTGGAAT GCTATGCAGA AACGGGACGA CTGGGCGACG
    GCCTGCTTCA CGGATGGGCT TCATCTGTCT GAAGAAGGGA GCAAGATTGT
    TGTGGAAGAG ATCCTGAGGA TCCTCAAGGA GGCAGAGTGG GATCCATGCC
    TGCACTGGAA GGCGATGCCG ACAGAGTTTG GGGAGGACTC ACCCTATGAT
    CTCGTCTCCT CCAGCGGCCA ATCCACCGTC AACCCCTCCG ACTGGACCTT
    CCACAGGACT ATCCAATGGG ACTGACCTTC CATTCGTCTC AATCTCAGTA
    TCTCATGATG GAGCATATAC ATGCATGCTC CAACGTGCAA CATTACATGC
    ATGATTCATA ATTAAGATCC CCTTCGGTCT TACTATATAT GTAGGGGTCT
    AATGCTAGCT GATGACGAGG GGTCATGGAT TAGGCTTCAG CTCGATCGAG
    CTGAAAAAAA ATCAGATTTA GGATGATATT AACTGCTTTG CTCCCTGCCT
    GCTATATATC ATAAGTGAGA CAATGCACAT GATTATCTCG CTATATACTA
    TGTGACTCAT TTCGCT

    Gene models with high sequence identity

    1. AT3G11210.1 [+] show detail - SGNH hydrolase-type esterase superfamily protein
      E-value: 1e-104; Score: 376.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D Esterase, SGNH hydrolase-type, subgroup 2e-12
    HMMPfam Lipase, GDSL 5.2e-28
    superfamily Esterase, SGNH hydrolase-type 4.3e-37

    See the detailed result >

    AT3G11210.1

    Model type
    Protein coding
    Short Description
    SGNH hydrolase-type esterase superfamily protein
    Computational Description
    SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR