K33428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33428

Determination of introduced cDNA(s)

J023003K18 - Rice Full-length cDNAs - Original: J023003K18

full reading [+] show sequence

GGCGCCAACA CACATAGGAG ATAGAAAAGG TGACACAACC CACAGAAACC 
CAAACCCCCC AAAAAAGCCA TGGCCATGTC TCCTCTCACC ACCATCCTCC 
TCCTCGCCGC CGCCGTCGGC GCCACCTGCG CCACCTCCGC CACCGCCTCG 
GCCGCGCCGC TCCACGGCAT AGCGAACGAC CTCCTCCCGG AGTACGGCCT 
CCCGCGGGGG CTGATCCCGG AGACGATCGC GTCCTACACC TTCGACAACG 
ACACGGGGGA CTTCGAGATC CGGCTGACGA GCACCTGCTA CATCTGGTTC 
GGCTCCCACC TCGCCTACTT CGAGGACGCC ATCCGCGGCC GGATCGCGTA 
CGGCACCATC ACGGGGCTCT CCGGGATCCA GGCGCAGAAG TTCTTCGTCT 
GGGTCTCCAT CACCACCATC GTCGCCCACC CCGACCAGGG CACCGTCGAG 
TTCCGGGCGG GGTTCATCTC CGAGGCGCTG CCGGAGTCGG ACTTCGCCGA 
GGTCCCCGTC TGCGGCGCCG GCGCGCGGCT CCGCGGCGCC GCCGGGCTCG 
CACGCCAGCT CGGCCTGCAG CTCCCCACCG TCGCCGAGGC ATGAGCTTCT 
GAGTTGGGAA TCGACCTGCA GCAAACTTGA GCACCTCCGG TTCGATGTTG 
TTACAAAATA AAGAAGACGC GCCCTTGAGC TCAGGAGGCT GTGCAAGGTT 
TGCTGTTTAG TGTGTACGTT TTGTGTGGTT ATTTATTTAT GAACATGGAT 
GCTATCCACA AGTCTAAGAT CAATATATTT CTACCGCGCC CGGGTAGAGC 
TATAGATTAA AGTCGGACCG TGTTGTCGTC GGATTCATGT GAGTTCTGAT 
GGCATAGGGG GTCCGAATGC AGTGAAAATT TGCATGGAAC TTCATATATG 
TAGTGTATTT ATGTGTATGT AAATGGCAAG TACCTGGCTA CCTGCTCCCA 
TGTTTTAAGG AGAAGAGTTG GATCTTGAAG TTTC

Gene models with high sequence identity

AT1G55265.1 [+] show detail - Protein of unknown function, DUF538
E-value: 1e-24; Score: 110.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF538	1.2e-29
Gene3D	Protein of unknown function DUF538	7.3e-28

See the detailed result >

AT1G55265.1

Model type: Protein coding
Short Description: Protein of unknown function, DUF538
Computational Description: Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G19860.1); Has 529 Blast hits to 529 proteins in 37 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR