K33431

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33431

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33431

Determination of introduced cDNA(s)

  • J013002L23 - Rice Full-length cDNAs - Original: J013002L23

    full reading [+] show sequence

    Nucleotide sequence: J013002L23 - full reading
    GAAGCAAACC CAACCCACCG CTACCCTCTT CTCGCCGCAA GCGAGGCGAG 
    CCAAGCAAAC GCGAGGCCGA CGACGACGAC GAGGAGGAGG AAGCGCAGCC
    ACTAGTCGCG GCGGCGGCGG CGGCGGCGGC GGCGGGTGAT CGGAGGAGGG
    ATGGTGGGGC TTGTGGGAGG AGGAGGTTGG AGGGTCGGGG ATGATGCGGC
    GGGTGGGGGT GGGGGAGGAG CGGTGGCGGC GGGGGCTGCG GCGGCGGCGG
    AGGCGGAGCA CATGCGGAGG CTCCACAGCC ACGCCCCCGG CGAGCACCAG
    TGCAGCTCCG CGCTCGTCAA GCACATCAAG GCTCCTGTTC ACCTCGTGTG
    GTCGCTGGTG CGGAGCTTCG ACCAGCCGCA GAGGTACAAG CCGTTCGTCA
    GCCGCTGCGT CGTGCGCGGC GGCGACCTCG AGATCGGCAG CGTGCGCGAG
    GTCAACGTCA AGACCGGCCT CCCGGCGACC ACCAGCACGG AGAGGCTCGA
    GCTGCTCGAC GACGACGAGC ACATCCTCAG CGTCAAGTTC GTCGGCGGCG
    ACCACCGCCT CAGGAACTAC TCATCCATCG TAACTGTCCA TCCGGAGAGC
    ATCGATGGAA GACCAGGGAC GCTTGTGATT GAATCATTTG TGGTGGACGT
    GCCTGATGGA AATACAAAGG ACGAGACATG CTACTTTGTC GAGGCCGTGA
    TCAAGTGCAA CTTAACATCT CTCGCCGAGG TATCAGAGCG GCTAGCAGTT
    CAGTCACCCA CCTCGCCACT TGAACAGTAG GGTCATCACT GGCACGGGAC
    ATGCGAACCG GCATGAATAA GAAGCTTCAA ATGGTTGCTA GAGATTTAAA
    TCTTTTTGAG ATGGTAGTTC CTCCATTGTC TTCGATATAT ATGCCTCTTG
    TAAGGATTAG TATGTAGGGT TAATTATCTT TAGTTGCTGG CTAGTGATGG
    GCTTAGGTCT TTTTAGGGAC TGCACCTAGC TACCTTGTAG TTATGTATGC
    ATACTGCTAG TAGTATGTGT ATAAATAGGG AAGCATGGAG TGGTTTTTGC
    CTCTTTGGTG CACATGTGAA ACAACCTCAA GAGTTCTTTT TCCTGC

    Gene models with high sequence identity

    1. AT1G01360.1 [+] show detail - regulatory component of ABA receptor 1
      E-value: 1e-70; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bet v1-like 1.8e-31
    HMMPfam Polyketide cyclase/dehydrase 9.3e-19

    See the detailed result >

    AT1G01360.1

    Model type
    Protein coding
    Short Description
    regulatory component of ABA receptor 1
    Curator Summary
    Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor.
    Computational Description
    regulatory component of ABA receptor 1 (RCAR1); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: PYR1-like 7 (TAIR:AT4G01026.1); Has 395 Blast hits to 395 proteins in 28 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR