K33439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K33439

Determination of introduced cDNA(s)

  • J023022H13 - Rice Full-length cDNAs - Original: J023022H13

    full reading [+] show sequence

    Nucleotide sequence: J023022H13 - full reading 
    GGGAAGCCCA TCTCGCCTCG CCGCCCCCCT TCATATTCAC CCTCCGCCGC 
    CTCGTCAATT CCACGCGAAC GCGAGAGCTC TCGGAAAGCA CCACCACCAG 
    CACAGAGCCA GCGCGAGAGA GAGAGAGAGG GAGACCAAAC CCCATCCCGG 
    ATCTCTCGTC GTCGGCGGCG TCTGCGATGG CGCTCTCCGA CCGCTCCCGC 
    GAGTCGCTCC TCCCGAGCTT CCTCTACACC TCCTCCGCCG CGAGGTCCTT 
    CGCCACCGGC GCCACCCGCT TCCCCTCCCC GGTGTCCCCA GCTTCCCCGG 
    CTCCGGGTGC CGTCGGGGGC GGCGCGCCCA TCTCGATCCA GGCTCCCAGG 
    GAGAAGATCG AGATGTACTC GCCGGCGTTC TACGCCGCCT GCACTGCCGG 
    TGGGATCGCC AGCTGCGGGC TCACCCACAT GGCCGTCACG CCGCTCGACC 
    TCGTCAAGTG CAACATGCAG ATTGATCCAG CAAAATACAA GAGCATAACA 
    TCTGGGTTTG GCGTCCTCTT AAAGGAGCAA GGACCTAGAG GCTTCTTCAG 
    GGGATGGGTG CCTACCTTGC TTGGTTACAG TGCTCAGGGC GCATGCAAGT 
    TTGGGTTTTA TGAGTTCTTT AAGAAGTACT ACTCAGATAT TGCTGGGCCT 
    GAGTATGCTC AGAAGTACAA GACCCTAATT TACCTCGCTG GATCAGCTTC 
    TGCTGAGGTG ATTGCAGATG TGGCTCTCTG CCCATTTGAA GCTGTGAAGG 
    TTCGTGTGCA AACCCAACCT GGATTCGCTC GTGGACTGAG TGATGGGCTC 
    CCCAAGTTCG TCAGATCTGA AGGCGCTCTT GGGCTTTACA AGGGAATTGT 
    TCCTCTGTGG GGTCGCCAAA TCCCTTATAC TATGATGAAG TTTGCCTCCT 
    TTGAGACCAT TGTTGAAATG ATCTACAAGC ACGCTGTTCC TGTTCCGAAG 
    TCTGAGTGCA GCAAGTCTTT CCAATTGGGT ATCAGTTTCG CTGGTGGTTA 
    CATTGCTGGA GTCTTCTGTG CCATTGTCTC TCATCCAGCT GACAACTTGG 
    TCTCTTTCTT GAACAACGCC AAGGGAGCTA CAGTGGGTGA TGCTGTTAAA 
    AAGCTTGGTC TTTGGGGCCT TTTCTCTAGA GGACTGCCCC TTCGTATTGT 
    TATGATTGGA ACTCTTACTG GTGCTCAATG GGGTATTTAT GATGCTTTTA 
    AAGTCATGGT TGGACTTCCA ACAACCGGTG GTGTTACGCC CGCGCCCGGT 
    GCAGCAGAGA AAGCATTGCA AGCCAGTGCT TGATTCTTAT GCAGAGATAA 
    TGGCGATGTA TTCCTGAAGA TCCATCTTTG TTGTGGCTGG AATTGTATCA 
    ATTACTTGAG TTTAGCACCT AAATCCTAAT TTTAGTGGAT GATTCTTGTG 
    TCATCCTTTT GATGAGAGGA ACTCATTAAT CAGGTGAAGT AGGTCTTTTT 
    TGCCCCCGGG AAAGTTTGAT GCTTGATACA TAATAAATTT TTGGACAGCA 
    AGGCTGTTAG AGCTCAGGTT TTGGCATCAC CTGTACTGAG GAATACTCAC 
    ATCTTTGTGT TCCTTAAAAG CATACATACC TTGAATCAAT GCTACCCTAT 
    TTTTTTTGTT GC

    Gene models with high sequence identity

    1. AT5G14040.1 [+] show detail - phosphate transporter 3;1
      E-value: 1e-149; Score: 526.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Mitochondrial substrate/solute carrier 23.714
    ProfileScan Mitochondrial substrate/solute carrier 22.62
    ProfileScan Mitochondrial substrate/solute carrier 8.783
    superfamily Mitochondrial substrate carrier 6.9e-64
    HMMPfam Mitochondrial substrate/solute carrier 5.8e-22
    HMMPfam Mitochondrial substrate/solute carrier 4e-17
    HMMPanther MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN 2e-163
    HMMPanther Mitochondrial substrate carrier 2e-163

    See the detailed result >

    AT5G14040.1

    Model type
    Protein coding
    Short Description
    phosphate transporter 3;1
    Computational Description
    phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR