K33511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33511

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33511

Determination of introduced cDNA(s)

  • J033116A08 - Rice Full-length cDNAs - Original: J033116A08

    full reading [+] show sequence

    Nucleotide sequence: J033116A08 - full reading 
    GGAGCGCCGA CGCCGAGACG CCGAGAGCCC AAGGCCGGCT AGTCGGAGAG 
    TGCGGCCGCG TGCGGGTGGC TGCTGCGCTG CGCGAACTCC CCCGCCGCCA 
    AAGATGTTCT CCCCAGCGAT CAAGAAGCCC CACCTGCTCC ACCGCAGGGA 
    CAAGGAGGAG GCGTCCCCCT CACCCCCTCA CGCTCCCGCG CACACGCCCG 
    CGCCTCGTGG ATTTGCCGTC CACGACCGCC CCGCCACCGG CACCCCGGCG 
    CCGTGGACCT CCTCCTCCCT GCTCGCCAGG ATTTCAACAT CAACACGAAC 
    AGACAGGACA GGGGATTCTG GCCAGATCCA ACCGGTGCAT GTATCCGAAT 
    TTCCCCAAAT AGTTCGAAAT GCTCAAGCCA ACCTTCTGCA AAAGAGTTTT 
    TCCGGCAAGA ACATGCTTGC TGGTGGCATT GATAAAGAAA CATCCCTTGC 
    ATGGATGTTA TGTGGAAATG AGCTTTTTAT CTGGAGTTAC CTGGCTTCTG 
    TTGCAAAAGA CTGTCTTGTA CTTGAGGTCC CTTCTTCTCT TATGGGGAAC 
    AAAGAAGAAA AATCTCTATG TGGTAATCAG TGGGCAGTTT GCATAGTGAG 
    ATGGGGTAGT AGTGGTGCAT CAACACGGAG CAGTGGAGAT ATATTGCATC 
    GAAGAAGTTC GACTGGTTTT ATCCTGTGCA ACAAAAGAAC ACAAGCTATA 
    GCTTATTGGT CTGATATCTA TGCTGAAAGC AGTAAGAGTT CAGTTCTTGA 
    TTTAATTGGA TATGGTGATA CATCTTCAGG TGATGGCACA TCTGGAAACT 
    GCAGGATTAA TTCTCTTATT GCAGTGGCAG TTCCAGGAGG TATTAATGAA 
    TGCATTGTGA TTGCTTCTCA GCCAACAGGC ACATTATGGA TGTTCTGGTG 
    TTCACCAGCT GCAGTTCGTC GAAGAGAAAT TCATAAGGGT ACATTAGGAG 
    TTTATAATGC TGATCATTCT CAGAAAAATA GTGGTGGAAG GTCCTTGGCT 
    TGGCTACCAA GTAAAGCATC ATCTAAGGCT GCTGAACGGA CGTTCTTTTT 
    ATTGACTAGT CATGAGCTGC AATGCTGGAG CATCTCATTC GGGCATGATA 
    TCAACTGCAA AAAAATAGGG TCTCAGGAAA TTGTTGGTAG TGATGGTGAT 
    ATGGGAATAA AGAAAGACAT AGCTGGACAG AAAAACATAT GGCTTTTGGA 
    CATGCAGATA GATGATCATG GGAAAGAAAT TATCATTCTT GTTGCTACCT 
    TCTGCAAAGA TCGGGTGAGT GGGTCGAACT ACACTCAGTA TTCTCTTCTG 
    ACGATGCTGT ACAGACCTAA CCAAAAGTTT TCATCTGAAG ATAATGTGAT 
    TAAAACTGAA AGGTTTTTGG AGAAAAAAGC TCCTTCTCAG GTGATAATCC 
    CTAAGGCTAG AGTAGAGGAT GAAGAGTTCT TGTTTTCTAT GAGGCTAAAA 
    ACTGGTGGTA AGCCTTCTGG TTCTGTAATC ATACTGTCAG GTGATGGAAC 
    AGCAACAATA GCCATATACT GGAGAGGTTC AACCCGTCTC TATCAATTTG 
    ATCTGCCTTG GGATGCTGGA AAGGTTCTCG ATGCTTCAGT TATCCCATCT 
    TCCGAGGACA GAGATGAAGG AGCTTGGGTT GTTCTTACAG AAAAGGCAGG 
    AGTGTGGGCA ATTCCTGAGA AAGCTGTGTT AGTTGGTGGG GTTGAGCCAC 
    CAGAGCGGAG CTTGTCAAGA AAAGGAAGTT GCAATGAAGC AGTTGCTGAA 
    GAGAAAAGAA GAAATCAGGC ATTCAATGCT AGTGTTGTAC CCAGAAGAGC 
    TAGTTCTGAG GCTTGGAGTG CTGGAGAGAG GCAAAGACCA GCATTAACTG 
    GTATAGCTCA GCAGGCTGTG GTTGATGAGG AGTCTGAAAT GTTATTAAAC 
    CGGTTATTTC ATGATTTTGT TTTGTCCGGT

    Gene models with high sequence identity

    1. AT2G05120.1 [+] show detail - Nucleoporin, Nup133/Nup155-like
      E-value: 4e-134; Score: 475.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein At2g05120 1.5e-160
    HMMPanther FAMILY NOT NAMED 1.5e-160
    HMMPfam Nucleoporin, Nup133/Nup155-like, N-terminal 1.2e-26

    See the detailed result >

    AT2G05120.1

    Model type
    Protein coding
    Short Description
    Nucleoporin, Nup133/Nup155-like
    Computational Description
    Nucleoporin, Nup133/Nup155-like; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 161 Blast hits to 161 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR