K33512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33512

Determination of introduced cDNA(s)

  • J013136H16 - Rice Full-length cDNAs - Original: J013136H16

    full reading [+] show sequence

    Nucleotide sequence: J013136H16 - full reading
    GACTTGCAGC AGCTGCAAAA TAAGCGAAGA TGACTACGCA AGGATTTGCT 
    CCCGTGCTTG CAGTAGCATT GCTCCTTGCA GCATTTCCTG CAGCGGTTCA
    GTCCATTGGC GTGTGCTACG GCGTGATCGG CAACAACCTG CCGGCGGCGA
    GCGACGTCGT GAAGCTCTAC AAGTCCAAGG GGATCGACTC CATGCGCATC
    TACTTCCCGA GGAGCGACAT CCTCCAGGCA CTCACCGGCT CGAACATCGC
    CCTCACCATG GACGTCGCCA ACGAGAACCT CGCCGCGTTC GCCGCCGACG
    CCACCGCCGC GGCCGCCTGG GTCAAGCAGA ACGTCCAGGC CTACCCGGGC
    GTCTCCTTCC GCTACATCGC CGTCGGCAAC GAGGTCACCG GCGACGACAC
    GGGCAACATC CTCCCGGCCA TGAAGAACCT CAACGCCGCG CTCGCCGCGG
    CCGGCCTCGG CGGCGTCGGG GTGTCGACGT CGGTGTCCCA GGGCGTGATC
    GCCAACTCCT ACCCGCCTTC CAACGGCGTC TTCAACGACG ACTACATGTT
    TGACATCGTG GAGTACCTGG CGAGCACCGG AGCGCCGCTG CTGGTTAACG
    TGTACCCCTA CTTCGCCTAC GTCGGCGACA CGAAAGACAT CAGCCTCAAC
    TACGCCACGT TCCAGCCGGG CACGACGGTG ACGGACGACG GCAGCGGGCT
    GATCTACACG AGCCTCTTCG ACGCGATGGT GGATTCCGTC TACGCCGCGC
    TGGAGGACGC CGGCGCGCCG GACGTCGGCG TGGTGGTGTC GGAGACCGGG
    TGGCCGTCGG CCGGTGGGTT CGGGGCCAGC GTGAGCAACG CGCAGACGTA
    CAACCAGAAG CTTATCAGCC ATGTCCAAGG AGGCACTCCG AAGAGACCAG
    GGGTGGCGTT GGAGACGTAC GTGTTCGCCA TGTTCAACGA GAACCAGAAG
    ACCGGGGCTG AGACCGAGAG GCACTTCGGG CTGTTCAACC CCAACAAGTC
    GCCGTCCTAC AAAATTAGAT TCCACTAGAC AAGAGTGATA TACTAATATT
    ACATTTGGAT TTGGAATAAG CTAGCTGCTC ATGTCAAATG CAAAACCGCA
    TGCATGCATG GGAACGTACG GCCAGCATAT AGTTTTGTGG TAATAAGCAC
    AGCTGCTCAA GATTCAGCAA CGTACGTGTA ACTCTGCCTT GGCACTTTGG
    CAGTGAATAC TGAACAATAA CGGAATTTAT AACTCTGTTT CCTTG

    Gene models with high sequence identity

    1. AT3G57260.1 [+] show detail - beta-1,3-glucanase 2
      E-value: 4e-72; Score: 268.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 2.7e-111
    PatternScan Glycoside hydrolase, family 17 0
    HMMPfam Glycoside hydrolase, family 17 6e-132
    Gene3D Glycoside hydrolase, subgroup, catalytic core 2.5e-120

    See the detailed result >

    AT3G57260.1

    Model type
    Protein coding
    Short Description
    beta-1,3-glucanase 2
    Curator Summary
    beta 1,3-glucanase
    Computational Description
    "beta-1,3-glucanase 2" (BGL2); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, protein binding, cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: systemic acquired resistance, response to cold; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 3 (TAIR:AT3G57240.1); Has 2232 Blast hits to 2218 proteins in 176 species: Archae - 0; Bacteria - 18; Metazoa - 3; Fungi - 79; Plants - 2105; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR