K33513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33513

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33513

Determination of introduced cDNA(s)

  • J033046D05 - Rice Full-length cDNAs - Original: J033046D05

    full reading [+] show sequence

    Nucleotide sequence: J033046D05 - full reading
    GATCACTCCG CCTTCTCGAC GCCGCGTGGT CGCCGTCCGG CGAGCGGAGA 
    GTGCGGGCGG TGGCGGTGGC GGTGGCGGTG GTGGGGAGGG GACGAGGCGG
    CGGGGGCATG GTCACCATGT CGGCCGCGGC GAGCTGGACC GCCGAGGACG
    ACGTCCTGCT GAAGAACGCC GTCGAGGCTG GTGCCTCATT GGAATCCTTG
    GCTAAAGGAG CTGTATGTTT TTCCCGCAAA TTCACTCTTC AAGAATTACA
    GGATCGTTGG TCCTCATTGC TGTATGACTC AGAGACCTCA GGACAAGCAT
    CTGCCCTCAT AGTCAAGTAT GAGACTGAAC TTTCAACCTC CAACCCGACC
    AAAGCACATA AACTTTTCTA CGTGAGGAGA AAACATCTTT CTCTCAGGAA
    GAGGAAAATT GAGAGTGTAA AGAATCAGTA TTATGCAATG AGAAAGAGAA
    TCTGCCATGA TCCATGTTTG GCTGCAGATT TTGGTTATGT TATCACACCC
    TGTTCATGCC CTGTAGGTAG TGATTGTGTA TGTGATGGAT TATTTAACTT
    GTTGGAAGAT AATCATTTGA TCCATAACGT TAATCAAGCT CCAGATGTTG
    TAAATGGCTA TGGTCACATA GGCGAAAGCT ATGCTGATGG ACAAGATGTA
    CATGCCAAAG ATAATGGACA TTATATATCC CATAGAAGGC ATGATAAAGC
    TGCTGGGACA GTGGCAAGTG ATGGAAGCAC TAATTGTGAA AGTGCAAATG
    GCTGTTCTGA TGTAGGTAAG TTATATGGAT ACAACTTCAT GCCAAAGAAC
    ATTCAGTCAA GTGAAAGGAA TATTGCCTCT CCAAAGGACC TTTCTGATGT
    CCAGGACTGT GTGCAGCCTC AGCAACCAAT TCTTTGTGAA GAATCAGCCA
    ATGGAATGAC AGGGTTAAAG GCTTTACTGA ATACTGATCA AGATTGCATA
    AAACAGAACC AGTTTTCTGG TAACAGCAAT GAAATATTGC AAGACCCAGG
    CTCGCTAAAA GCAATGAGTG AACATTGGTG TTCTCAGGCA CCTAGTGCTC
    CTACTAGGAA GAAGTTTCAG GGTGTTAATG CACCTGACAT GCTGACAGAT
    GTGCATCACA AAGAGCAAGA AATTCTTGCC TTTTCTGATG ACAAGAAAAA
    GGAAACTACT AACATTGACA CATTTTCATG CAAGGTGAAT GTGGAGAATG
    GAATGTCTGG ATCTGGCTTA GACGATGCAA CAGAAGGTGA AGTTATGCAC
    TCATGCTTAA TGGATGCCAG TCAGGGTGAA GACTTTGAGC TACTTAATAG
    CGAGAATATT TTGGATTCTT CTCTTGACCC AAATCTGGAA GGTTTAGGCG
    ATCGACATGC TAATGTTATT CTGAAGGACA TCTCCAAAGA GCACCTTCTG
    GACATTCCTC ATGTAAGCAG TGCCTGTGGT AACAACACAG ATCCAATCCA
    TGAGAAGCAT GATGTGGCAG ATATTTCTGG AGTGGACATG ATATACACAA
    CAGAAGTGCC TTTTCCTTGT GCTGGTATTG TGTGCATATT AAACACCGAA
    GATCCTGAAA TCCCTTGCAA TGATGATATC TTTACACCTG GGCCTGTAGC
    ATCCACCTCT ACTTGTGACC AGAATTCACA GCACAATATG CATTTGGTTT
    CTGCCAAACC TATTCCTCCA CTAAATGCTG CTGACTTGAA TCACACCGAC
    TTGGTTAGTG ATGTCCAACC ATTGTTACTT ACAATGAAGT TGGAACCTTA
    CACCTTGGAA CAAAAGGAAA CTTTGGTGGG TCTTAATGAA TCTTGTACCG
    TAAGAAGCAA GTCACCTGTT ATGCCTGTTG ATGCTAGCAA TGCAAATGCA
    TGCACATCAA CTTTCCATTC TGCTGCAGAA TTTGTTAAAA AATCTACATG
    TGGTTTAGTG CAACATGAAT GTTTTGATAA CTTGGGGAGT GTGTCTTTGG
    ATGAGTGTAT TGGAGTGCTT GATGAAATGA ATTCTAAGGT TCCTGATGAG
    TCAGGAATAA GTTGTGATGC TACTACCCAA AACAGCATTT CAGCGCATGC
    ATTGCCAGAT GTGGAATTTC TTAATCCCAT AACAACCACT TCAAGCCCAG
    AAGGGGGAGG ATCTGACAGT GAGGACGGTA TTCCAAACTA TTTCGACATA
    GAAGCTTTGA TACTTGATCA GGATTTAATT CCATGGGATC AAGAATCTGA
    TTTCATCCAG CTCGAAGTTT CCAGGTTTCA GTCTCTTGAA AGTAGGAAAG
    ACTTGATAAG ATTAGAACGA GGTGCCCGCT CTAATACAAA CAGATCTATT
    ATGTCCCATG GTGCTTTTGC AGTTCTTTAT GGCCAGCATT TGAAATACTA
    CATAAAGGAT CCAGAGGTTA CACTTGGGAG AGAAACAAGT GAGGAACATG
    TCGACATCGA TTTGGGAAAA GAAGGAAAGG CGAATACAAT ATCCCGTCAA
    CAGGCAATTA TCAAGATGGA TAAAGGTGGA TCTTTCCACA TAACGAATAT
    AGGAAAAGCT CCAATCTTCG TCAATAGCAA AGAAGTTCCA TGCAACGAAT
    GCACTCACTT AATTTCTGAT GCATTACTTC AGATAAGGCA CATGAAATTC
    ATTTTTCACA TCAATCAGGA TGCCGTGAGG CAACATATAG TTCGCAGTAG
    GAGAGGAACC TCCCAAGGCA AGTACGCAGT ATTTAATTGG GATGAAAAGC
    CATGAATTAA GGTTACGATC AAGCTCATGT GTGAATTTAT TGTCAGTAAT
    ATATATCGGC AGGATAGAAG TATATAGCAC CATATCTAAT TCGGTCCCAT
    CCTTTGCATG TAAATCGTTG TATATTTCCA TGCTTATCAT TTAGTATATA
    ATAGATATAT GCTCAATTAT CGTCTTCAGA TCCATATTGT TGTAAGGTGC
    CACGGTTTTA TGTTTGAAAT TTGGATTTAA ATTTCATCG

    Gene models with high sequence identity

    1. AT3G54350.3 [+] show detail - Forkhead-associated (FHA) domain-containing protein
      E-value: 3e-47; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Forkhead-associated (FHA) domain 2.7e-06
    HMMPanther MICROSPHERULE PROTEIN 1 4.6e-20
    ProfileScan Forkhead-associated (FHA) domain 10.496
    superfamily SMAD/FHA domain 3.1e-10
    HMMSmart Forkhead-associated (FHA) domain 1.2e-06

    See the detailed result >

    AT3G54350.3

    Model type
    Protein coding
    Short Description
    Forkhead-associated (FHA) domain-containing protein
    Computational Description
    embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR