K33513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33513

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33513

Determination of introduced cDNA(s)

  • J033046D05 - Rice Full-length cDNAs - Original: J033046D05

    full reading [+] show sequence

    Nucleotide sequence: J033046D05 - full reading 
    GATCACTCCG CCTTCTCGAC GCCGCGTGGT CGCCGTCCGG CGAGCGGAGA 
    GTGCGGGCGG TGGCGGTGGC GGTGGCGGTG GTGGGGAGGG GACGAGGCGG 
    CGGGGGCATG GTCACCATGT CGGCCGCGGC GAGCTGGACC GCCGAGGACG 
    ACGTCCTGCT GAAGAACGCC GTCGAGGCTG GTGCCTCATT GGAATCCTTG 
    GCTAAAGGAG CTGTATGTTT TTCCCGCAAA TTCACTCTTC AAGAATTACA 
    GGATCGTTGG TCCTCATTGC TGTATGACTC AGAGACCTCA GGACAAGCAT 
    CTGCCCTCAT AGTCAAGTAT GAGACTGAAC TTTCAACCTC CAACCCGACC 
    AAAGCACATA AACTTTTCTA CGTGAGGAGA AAACATCTTT CTCTCAGGAA 
    GAGGAAAATT GAGAGTGTAA AGAATCAGTA TTATGCAATG AGAAAGAGAA 
    TCTGCCATGA TCCATGTTTG GCTGCAGATT TTGGTTATGT TATCACACCC 
    TGTTCATGCC CTGTAGGTAG TGATTGTGTA TGTGATGGAT TATTTAACTT 
    GTTGGAAGAT AATCATTTGA TCCATAACGT TAATCAAGCT CCAGATGTTG 
    TAAATGGCTA TGGTCACATA GGCGAAAGCT ATGCTGATGG ACAAGATGTA 
    CATGCCAAAG ATAATGGACA TTATATATCC CATAGAAGGC ATGATAAAGC 
    TGCTGGGACA GTGGCAAGTG ATGGAAGCAC TAATTGTGAA AGTGCAAATG 
    GCTGTTCTGA TGTAGGTAAG TTATATGGAT ACAACTTCAT GCCAAAGAAC 
    ATTCAGTCAA GTGAAAGGAA TATTGCCTCT CCAAAGGACC TTTCTGATGT 
    CCAGGACTGT GTGCAGCCTC AGCAACCAAT TCTTTGTGAA GAATCAGCCA 
    ATGGAATGAC AGGGTTAAAG GCTTTACTGA ATACTGATCA AGATTGCATA 
    AAACAGAACC AGTTTTCTGG TAACAGCAAT GAAATATTGC AAGACCCAGG 
    CTCGCTAAAA GCAATGAGTG AACATTGGTG TTCTCAGGCA CCTAGTGCTC 
    CTACTAGGAA GAAGTTTCAG GGTGTTAATG CACCTGACAT GCTGACAGAT 
    GTGCATCACA AAGAGCAAGA AATTCTTGCC TTTTCTGATG ACAAGAAAAA 
    GGAAACTACT AACATTGACA CATTTTCATG CAAGGTGAAT GTGGAGAATG 
    GAATGTCTGG ATCTGGCTTA GACGATGCAA CAGAAGGTGA AGTTATGCAC 
    TCATGCTTAA TGGATGCCAG TCAGGGTGAA GACTTTGAGC TACTTAATAG 
    CGAGAATATT TTGGATTCTT CTCTTGACCC AAATCTGGAA GGTTTAGGCG 
    ATCGACATGC TAATGTTATT CTGAAGGACA TCTCCAAAGA GCACCTTCTG 
    GACATTCCTC ATGTAAGCAG TGCCTGTGGT AACAACACAG ATCCAATCCA 
    TGAGAAGCAT GATGTGGCAG ATATTTCTGG AGTGGACATG ATATACACAA 
    CAGAAGTGCC TTTTCCTTGT GCTGGTATTG TGTGCATATT AAACACCGAA 
    GATCCTGAAA TCCCTTGCAA TGATGATATC TTTACACCTG GGCCTGTAGC 
    ATCCACCTCT ACTTGTGACC AGAATTCACA GCACAATATG CATTTGGTTT 
    CTGCCAAACC TATTCCTCCA CTAAATGCTG CTGACTTGAA TCACACCGAC 
    TTGGTTAGTG ATGTCCAACC ATTGTTACTT ACAATGAAGT TGGAACCTTA 
    CACCTTGGAA CAAAAGGAAA CTTTGGTGGG TCTTAATGAA TCTTGTACCG 
    TAAGAAGCAA GTCACCTGTT ATGCCTGTTG ATGCTAGCAA TGCAAATGCA 
    TGCACATCAA CTTTCCATTC TGCTGCAGAA TTTGTTAAAA AATCTACATG 
    TGGTTTAGTG CAACATGAAT GTTTTGATAA CTTGGGGAGT GTGTCTTTGG 
    ATGAGTGTAT TGGAGTGCTT GATGAAATGA ATTCTAAGGT TCCTGATGAG 
    TCAGGAATAA GTTGTGATGC TACTACCCAA AACAGCATTT CAGCGCATGC 
    ATTGCCAGAT GTGGAATTTC TTAATCCCAT AACAACCACT TCAAGCCCAG 
    AAGGGGGAGG ATCTGACAGT GAGGACGGTA TTCCAAACTA TTTCGACATA 
    GAAGCTTTGA TACTTGATCA GGATTTAATT CCATGGGATC AAGAATCTGA 
    TTTCATCCAG CTCGAAGTTT CCAGGTTTCA GTCTCTTGAA AGTAGGAAAG 
    ACTTGATAAG ATTAGAACGA GGTGCCCGCT CTAATACAAA CAGATCTATT 
    ATGTCCCATG GTGCTTTTGC AGTTCTTTAT GGCCAGCATT TGAAATACTA 
    CATAAAGGAT CCAGAGGTTA CACTTGGGAG AGAAACAAGT GAGGAACATG 
    TCGACATCGA TTTGGGAAAA GAAGGAAAGG CGAATACAAT ATCCCGTCAA 
    CAGGCAATTA TCAAGATGGA TAAAGGTGGA TCTTTCCACA TAACGAATAT 
    AGGAAAAGCT CCAATCTTCG TCAATAGCAA AGAAGTTCCA TGCAACGAAT 
    GCACTCACTT AATTTCTGAT GCATTACTTC AGATAAGGCA CATGAAATTC 
    ATTTTTCACA TCAATCAGGA TGCCGTGAGG CAACATATAG TTCGCAGTAG 
    GAGAGGAACC TCCCAAGGCA AGTACGCAGT ATTTAATTGG GATGAAAAGC 
    CATGAATTAA GGTTACGATC AAGCTCATGT GTGAATTTAT TGTCAGTAAT 
    ATATATCGGC AGGATAGAAG TATATAGCAC CATATCTAAT TCGGTCCCAT 
    CCTTTGCATG TAAATCGTTG TATATTTCCA TGCTTATCAT TTAGTATATA 
    ATAGATATAT GCTCAATTAT CGTCTTCAGA TCCATATTGT TGTAAGGTGC 
    CACGGTTTTA TGTTTGAAAT TTGGATTTAA ATTTCATCG

    Gene models with high sequence identity

    1. AT3G54350.3 [+] show detail - Forkhead-associated (FHA) domain-containing protein
      E-value: 3e-47; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Forkhead-associated (FHA) domain 2.7e-06
    HMMPanther MICROSPHERULE PROTEIN 1 4.6e-20
    ProfileScan Forkhead-associated (FHA) domain 10.496
    superfamily SMAD/FHA domain 3.1e-10
    HMMSmart Forkhead-associated (FHA) domain 1.2e-06

    See the detailed result >

    AT3G54350.3

    Model type
    Protein coding
    Short Description
    Forkhead-associated (FHA) domain-containing protein
    Computational Description
    embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR