K33515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33515

Determination of introduced cDNA(s)

  • J033122P06 - Rice Full-length cDNAs - Original: J033122P06

    full reading [+] show sequence

    Nucleotide sequence: J033122P06 - full reading 
    GCGTTCGCAC TTGGCAGGTG GCAGCAGCAA TCCTCTCTTG CTAGCCATCT 
    CTTGCAACCG GCACTTCCCC CCTGCGAGTC CACGAGATCT GCTATCGCAT 
    CATCAGGTGC GCAAACTAAC TAGCAGCCAC ACTGAGAAAG AGTGCACAAG 
    ATGTCTGAAG CGATAGCCCT TGCGATGTCA AAGATTGAAA CCTGTGTAGA 
    GACTGTAGCT TCATTCAACA ACGCAATGTC CAAGCTATCT AAAAAGGATA 
    AGGTTGTGAA GGAATTGCTG GAAAAGATCA AACAAATACA GGAGCAATTG 
    GATATCACCA ATGATTTCAT CCAAAATCAC ATAGGCACAG CCAACCTTGG 
    TGACCCATTA GATGAGAGTT GGATTGCCAC AGTGAGGAGG CTGGCCTTCA 
    TTGTTGAGGA TGTAATGGAG AAGTACTTGT ATTATGCTCA TCAACTGCAG 
    GAAGAGGGGT CACAGAAGCA CCCTGTCAAA AGGTCAAGCT ATGTCGATGT 
    TTTCAAAAAA GTTGGTCAGT TGATGGACAA GATAAATAAT CGCATTGGGC 
    ACCTTTTAAG CATCAGAGAG CAGAGTAAGC TTGCACCGCA GCTTGTTCCT 
    CACTCACCAT ACCCCGATTC AGAGGGCCAA CCGGAGCTCA TTGGTACCAA 
    TGGCCCAATT AATGTACTAC TGAAATTTCT GAAGCATGGT GAGGACGGAG 
    CTGTGCTGCA ACTCAAGGTT CTATCTATGC TTGGAATTGG TGGAATTGGT 
    AAAACCGCAC TTGCATCCAA GGTGTATCGA ATGCTTCGAG AAGAATTTCA 
    GAGCCATGCT TTTGTGACAG TGTCCAAGAT GCCTGATATG ACAAGGGTCT 
    TATTTGATAT ATTGGACCAA ATTGGCCTGC GGAAGTATCC AGCTAGTTTG 
    AACGAGAATC AAGTCATTAC TCAAATTGGA CAAGACCTAA AGGATAAGAG 
    CTATCTCATT GTAATTGATG ATTTATGGGA TATGCAACAT TGGAAGACTA 
    TCAAGGATGC CTTGCCTGAT GTCAATTGTG GTAGCAGATT GATAGTTATA 
    ACTCGTCTAA ACAACATAGC CAAAACATGT AGCTCTGGCC AGAATAATTT 
    GACGTATAAG GTCATGCCTC TTGCTCACCA TGACTCCAGA ACATTGTTTC 
    TCAAGGAAAT TTTGGGCCAT GAGGGCAGTT GCTTGGATGC ACCAGTTTTT 
    GATGAAATTT TGAAAATGTT TGGTGGTATG CCTTCAGCAC TAAAATGTAT 
    TGGCTCATTT CTGCGCAACA AATCAGTCAC AACTGAGTCT CAGAAGATCA 
    ATATGAGTTC TTTGTATTCT GAACTTGAGA ATTTTCCTAG CTGGAAGAAA 
    TTGAAAATTG CTCTTTTCCT CAGTTGCTGT GGTCCTTCCC AAACTCTGGA 
    GGCTTGCTCG TTGTACTTAA GTACATTACC AGACAATCAT AAGATCGAGA 
    GAGATATTTT GACTAGGAAA TGGATTTCTG AAGGAATTAT CCTTAAAGAT 
    GATGAGCTTA GTATTAACGG AGTGGTGAAT AATTGCTTTG AGGAACTAAT 
    CAATAGGAAT GTGATTCAGC AAGTGGACAA TAGTTTTGGG GAGTAAACCT 
    ATGAAATCCA ATTTCTGATG CACCACATTC TTAGGCAGAT AGCACGAGAA 
    AGGAATTTTG CTACCTTCCT ATCGGAAAAT ATTTTGATAT CATGCAAGGA 
    GCCTATCCAT CGCCTCTCAT TTCACTGTTC TAAGTTAAGA ATTTCGATTG 
    ATAAAGGTGA TATTCAGATT ATTTCGGATT CAGGAGATTC AAATCAAAAA 
    CCTAAGAGTC TATCGCTTGC TCGCTCCATA ACTCTATGTG GTTATGCAAA 
    GCCAGTTTCT TTTAAGCTTT TGGAGCACCT GCACGTGTTA GATCTGGAAG 
    GTTGCTGGAA TGTGGACAAC TCTACTTTGG ATGATATATG CCGCATGATC 
    CTGCTGCAGT ACTTAAGTCT CAAGAAAACA CGAATAACTG TGCTACCTCC 
    ACAGATTGAG AATCTAAGAT GTCTCAAGAC ACTGGCTGTA ACCCAAACTG 
    GAATCGCAGA ACTCCCACTG CAAATTGGGA AGTTGCCTGA TTTGGAGACT 
    CTGGATGTAA GGCATACACA GGTCAAAGAG ATACCGAAGG AACTTGTTCA 
    ACTTCCTAAA TTGGTGTGTT TGCTTTTTGG TCAAAGTGGT TTTCACGGTG 
    GAGTTAAGTT CCCTGTGGGA GGTAATCCTT CAAAGTCACT AAAGGTGCTG 
    GGTTCCATCG ATTCAACACA ATGCTCAGCA AGTTTCATGG GGGAGCTTAG 
    TAGTTTGACA GGGCTGACGA AGCTTTCAGT AGTGTGCTAT GACGGGACCA 
    AGGACATGGA GTGGAATCTT CGTATGATGA ATTCTATGTT CAAATTTAGC 
    AATCTTGAAT CCCTGACAAT TTATGGTGAT TTCATTTTGG GCAACGAAGT 
    TCCTGCACTC CAGAATCCTC CTAAACTTCA GAAGTTGAAG TTGGCCGGAA 
    GATGTTTGAG TGTTCCTGGT TGGATTGATA AATTCAGCGA TGTTACCCTT 
    CTAGATATCA GGGTTTGCAG CCTAGAAGAG AGTGATATGA AGATACTTTG 
    CAAGATGAGC TCCCTGCAGA GACTTGTGTT AACACAGGTT CACATGCCAA 
    TAAAACAACT AGAAATCACA AAGGAAGCAA GTTTCAGCAA ACTAAATGGT 
    TTCACATTTG ATTGCCGTGT GCCTTGGGTA ACCTTTAAAG AAGAAGCTAT 
    GCCAAGTCTG CAATACCTCG AACTGAAGCT TTATGCTGGC CCAGCGGGTA 
    AAATTCCTTC AGGTATTACA TGCCTACCAT GTCTCACAAA GGTTATCCTC 
    CGGTACTTGG TACATTACCA AAGCAGTGCT AGTGTACAGG ATACAATTTC 
    TAAAATGAGA AAAGAAAGCA GTGAGCATCC CAATATGATC GTGCTTTCTC 
    AAAATGGTGA GCATGAGATT TTCCCACAAA ATGCTGTTTC TCGAAATGGC 
    GAACTCGAGA TTGTCCCGGT CAATGCTGTT GATGGCATGC ATCAGGATTA 
    GCACAGGCAA AAATTGAAGA ACAATATTGT CATTGTTAAC GCCCTATCTG 
    ACTGCATTCT ACTGCCGTTG TTCTCTGGTG GGTTATAAGG ACTGGTATAT 
    TAACTTGCAT CGTACAAACG GCAAATTAAT CCTCATTCTC GTGCCAGACA 
    TAGTTGTGGA GCAGACGGGC AAATCAGATC CTATTGGAAT TACAATCCTT 
    CTATGACTCA AGCCAACCAA ATCAATCAAG ATAGAAGCCA AATTAAGTTG 
    AAAAATATTT GCTAGGGATT GCAATTCGCA GCAGTGAGGA GCGCAAGTAA 
    CAATCAGGTA GTACTTTGAT AATTTGGTTT CTCTAAAGTT CCGCATGTAT 
    TAGTATGTAT TGAATTGGAA TTAATGTGTC CCTGTTCACA TTGATATCTA 
    ATATATCACG ATTTCTCAAT GATTGAATCA CAATAAATTA TATATATCTT 
    TTGTTCG

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 9e-42; Score: 169.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000000000019
    superfamily P-loop containing nucleoside triphosphate hyd 0.0000000000000014
    superfamily L domain-like 8.3e-32
    FPrintScan Disease resistance protein 0.0000000000092
    FPrintScan Disease resistance protein 0.0000000000092
    FPrintScan Disease resistance protein 0.0000000000092
    HMMPanther LEUCINE-RICH REPEAT CONTAINING PROTEIN 0.000000000046
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.000000000046
    HMMPfam NB-ARC 3.6e-40
    Coil coiled-coil 0

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR