K33515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33515

Determination of introduced cDNA(s)

J033122P06 - Rice Full-length cDNAs - Original: J033122P06

full reading [+] show sequence

GCGTTCGCAC TTGGCAGGTG GCAGCAGCAA TCCTCTCTTG CTAGCCATCT 
CTTGCAACCG GCACTTCCCC CCTGCGAGTC CACGAGATCT GCTATCGCAT 
CATCAGGTGC GCAAACTAAC TAGCAGCCAC ACTGAGAAAG AGTGCACAAG 
ATGTCTGAAG CGATAGCCCT TGCGATGTCA AAGATTGAAA CCTGTGTAGA 
GACTGTAGCT TCATTCAACA ACGCAATGTC CAAGCTATCT AAAAAGGATA 
AGGTTGTGAA GGAATTGCTG GAAAAGATCA AACAAATACA GGAGCAATTG 
GATATCACCA ATGATTTCAT CCAAAATCAC ATAGGCACAG CCAACCTTGG 
TGACCCATTA GATGAGAGTT GGATTGCCAC AGTGAGGAGG CTGGCCTTCA 
TTGTTGAGGA TGTAATGGAG AAGTACTTGT ATTATGCTCA TCAACTGCAG 
GAAGAGGGGT CACAGAAGCA CCCTGTCAAA AGGTCAAGCT ATGTCGATGT 
TTTCAAAAAA GTTGGTCAGT TGATGGACAA GATAAATAAT CGCATTGGGC 
ACCTTTTAAG CATCAGAGAG CAGAGTAAGC TTGCACCGCA GCTTGTTCCT 
CACTCACCAT ACCCCGATTC AGAGGGCCAA CCGGAGCTCA TTGGTACCAA 
TGGCCCAATT AATGTACTAC TGAAATTTCT GAAGCATGGT GAGGACGGAG 
CTGTGCTGCA ACTCAAGGTT CTATCTATGC TTGGAATTGG TGGAATTGGT 
AAAACCGCAC TTGCATCCAA GGTGTATCGA ATGCTTCGAG AAGAATTTCA 
GAGCCATGCT TTTGTGACAG TGTCCAAGAT GCCTGATATG ACAAGGGTCT 
TATTTGATAT ATTGGACCAA ATTGGCCTGC GGAAGTATCC AGCTAGTTTG 
AACGAGAATC AAGTCATTAC TCAAATTGGA CAAGACCTAA AGGATAAGAG 
CTATCTCATT GTAATTGATG ATTTATGGGA TATGCAACAT TGGAAGACTA 
TCAAGGATGC CTTGCCTGAT GTCAATTGTG GTAGCAGATT GATAGTTATA 
ACTCGTCTAA ACAACATAGC CAAAACATGT AGCTCTGGCC AGAATAATTT 
GACGTATAAG GTCATGCCTC TTGCTCACCA TGACTCCAGA ACATTGTTTC 
TCAAGGAAAT TTTGGGCCAT GAGGGCAGTT GCTTGGATGC ACCAGTTTTT 
GATGAAATTT TGAAAATGTT TGGTGGTATG CCTTCAGCAC TAAAATGTAT 
TGGCTCATTT CTGCGCAACA AATCAGTCAC AACTGAGTCT CAGAAGATCA 
ATATGAGTTC TTTGTATTCT GAACTTGAGA ATTTTCCTAG CTGGAAGAAA 
TTGAAAATTG CTCTTTTCCT CAGTTGCTGT GGTCCTTCCC AAACTCTGGA 
GGCTTGCTCG TTGTACTTAA GTACATTACC AGACAATCAT AAGATCGAGA 
GAGATATTTT GACTAGGAAA TGGATTTCTG AAGGAATTAT CCTTAAAGAT 
GATGAGCTTA GTATTAACGG AGTGGTGAAT AATTGCTTTG AGGAACTAAT 
CAATAGGAAT GTGATTCAGC AAGTGGACAA TAGTTTTGGG GAGTAAACCT 
ATGAAATCCA ATTTCTGATG CACCACATTC TTAGGCAGAT AGCACGAGAA 
AGGAATTTTG CTACCTTCCT ATCGGAAAAT ATTTTGATAT CATGCAAGGA 
GCCTATCCAT CGCCTCTCAT TTCACTGTTC TAAGTTAAGA ATTTCGATTG 
ATAAAGGTGA TATTCAGATT ATTTCGGATT CAGGAGATTC AAATCAAAAA 
CCTAAGAGTC TATCGCTTGC TCGCTCCATA ACTCTATGTG GTTATGCAAA 
GCCAGTTTCT TTTAAGCTTT TGGAGCACCT GCACGTGTTA GATCTGGAAG 
GTTGCTGGAA TGTGGACAAC TCTACTTTGG ATGATATATG CCGCATGATC 
CTGCTGCAGT ACTTAAGTCT CAAGAAAACA CGAATAACTG TGCTACCTCC 
ACAGATTGAG AATCTAAGAT GTCTCAAGAC ACTGGCTGTA ACCCAAACTG 
GAATCGCAGA ACTCCCACTG CAAATTGGGA AGTTGCCTGA TTTGGAGACT 
CTGGATGTAA GGCATACACA GGTCAAAGAG ATACCGAAGG AACTTGTTCA 
ACTTCCTAAA TTGGTGTGTT TGCTTTTTGG TCAAAGTGGT TTTCACGGTG 
GAGTTAAGTT CCCTGTGGGA GGTAATCCTT CAAAGTCACT AAAGGTGCTG 
GGTTCCATCG ATTCAACACA ATGCTCAGCA AGTTTCATGG GGGAGCTTAG 
TAGTTTGACA GGGCTGACGA AGCTTTCAGT AGTGTGCTAT GACGGGACCA 
AGGACATGGA GTGGAATCTT CGTATGATGA ATTCTATGTT CAAATTTAGC 
AATCTTGAAT CCCTGACAAT TTATGGTGAT TTCATTTTGG GCAACGAAGT 
TCCTGCACTC CAGAATCCTC CTAAACTTCA GAAGTTGAAG TTGGCCGGAA 
GATGTTTGAG TGTTCCTGGT TGGATTGATA AATTCAGCGA TGTTACCCTT 
CTAGATATCA GGGTTTGCAG CCTAGAAGAG AGTGATATGA AGATACTTTG 
CAAGATGAGC TCCCTGCAGA GACTTGTGTT AACACAGGTT CACATGCCAA 
TAAAACAACT AGAAATCACA AAGGAAGCAA GTTTCAGCAA ACTAAATGGT 
TTCACATTTG ATTGCCGTGT GCCTTGGGTA ACCTTTAAAG AAGAAGCTAT 
GCCAAGTCTG CAATACCTCG AACTGAAGCT TTATGCTGGC CCAGCGGGTA 
AAATTCCTTC AGGTATTACA TGCCTACCAT GTCTCACAAA GGTTATCCTC 
CGGTACTTGG TACATTACCA AAGCAGTGCT AGTGTACAGG ATACAATTTC 
TAAAATGAGA AAAGAAAGCA GTGAGCATCC CAATATGATC GTGCTTTCTC 
AAAATGGTGA GCATGAGATT TTCCCACAAA ATGCTGTTTC TCGAAATGGC 
GAACTCGAGA TTGTCCCGGT CAATGCTGTT GATGGCATGC ATCAGGATTA 
GCACAGGCAA AAATTGAAGA ACAATATTGT CATTGTTAAC GCCCTATCTG 
ACTGCATTCT ACTGCCGTTG TTCTCTGGTG GGTTATAAGG ACTGGTATAT 
TAACTTGCAT CGTACAAACG GCAAATTAAT CCTCATTCTC GTGCCAGACA 
TAGTTGTGGA GCAGACGGGC AAATCAGATC CTATTGGAAT TACAATCCTT 
CTATGACTCA AGCCAACCAA ATCAATCAAG ATAGAAGCCA AATTAAGTTG 
AAAAATATTT GCTAGGGATT GCAATTCGCA GCAGTGAGGA GCGCAAGTAA 
CAATCAGGTA GTACTTTGAT AATTTGGTTT CTCTAAAGTT CCGCATGTAT 
TAGTATGTAT TGAATTGGAA TTAATGTGTC CCTGTTCACA TTGATATCTA 
ATATATCACG ATTTCTCAAT GATTGAATCA CAATAAATTA TATATATCTT 
TTGTTCG

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 9e-42; Score: 169.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.9e-12
superfamily	P-loop containing nucleoside triphosphate hyd	1.4e-15
superfamily	L domain-like	8.3e-32
FPrintScan	Disease resistance protein	9.2e-12
FPrintScan	Disease resistance protein	9.2e-12
FPrintScan	Disease resistance protein	9.2e-12
HMMPanther	LEUCINE-RICH REPEAT CONTAINING PROTEIN	4.6e-11
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	4.6e-11
HMMPfam	NB-ARC	3.6e-40
Coil	coiled-coil	0

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR