K33522

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33522

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33522

Determination of introduced cDNA(s)

J033112P19 - Rice Full-length cDNAs - Original: J033112P19

full reading [+] show sequence

GGGTCTCCTC TTCCTAGTAC TAGCTGCGCC CCCCCCCCCC CCCAACCCCC 
TCGGGCGCCC GCTTCGCTCC GGCGACTCCA CCCGGCCGCG CCGCCGGGAT 
CCGCCCCCCC GCAGGCCGCC CCTCGTCGTC GTCCTCGCTG GTTCCCCGCC 
GGCCCCGGCG CCTTTTCCTT CTGATCCAGC CAGCCGCGTC GCGCGCGGCG 
CCGGGGGGCA TCGAATTCGA ATCCGCGCCC TCGCCGTCGT CGTCGCCGCC 
GCCGCCGCCG GACAATCCGG CGCCTGCCCC CTCCGTGCTC CCCCCGGCCA 
GAGGGATTGC GGGACTGATA CGGCCGGGAT CTTGCTGGAA ATGGGGGGTT 
ACGAGTACGC GACCAATGGT TATCATCGGG GAATGGAGGA TGACTATGAA 
GACGAGTACT ACAGTGAAGA TCCATATGAT GAGGAAGGGG AGGGTGCTGG 
TCAAGAGTAT GCCGAGGAGG ATGACGAGCC GCCGGAGGGA CAGCAAGAGT 
TCCTTCAAAT TAGAGAACGA TTAAAGGAGC AGATTAGGCG AAAGGCGCAG 
GCTGCTAGTG CTAGCGCTGC TGGCCGCTCA TCTTCCTCAC ATGATAGAAA 
ACCTCAATCC ACTTTTGGAT CCTTCTTTGG GCCATCCAAG CCGGTGATTT 
CCCAGCGGGT AATTGAAGAA AGAAAATCAC TGAAAGAACT ACAGAACACA 
GCGTCAATGT CCAGGGATCG AAGGCCTTCT GCAAAGGAGA TACCATCATC 
ATCTAAAGTG CAATCTAAAA CAGATGGACA TCACCACAAA CAGAAGATTG 
TAAATGAGGC AAAAAGAAAG GCTGAGGCAC TTAAGGATAA TCGAGACTAT 
TCATTTCTAC TGTCAGATGA TGCTGACATT TCACCTTCTC CAATGGAGAA 
ACCTGTGGCT AGGTCCTCCT TGAGTCAGAA GTCTGATCGC GAGTCGACAC 
ATTCAGCTGT GAAGAGCAGA GCACCGACAG GCCAAACTGC TAGATTGTCT 
AATGGATATG GATTGAAGAA CACATTGTCC AGTCAGAGGC ATACTGAAGG 
TAGGGTAGAT TCCAACAGAA AGGTGGCTGG TGCAAACAGA GAAAGGGTTG 
TCTTGCCTGA CAATGGAAGA ATGCATAGTG TGGTTAGAAA TGGATCCACC 
CAGGCTACTA CAAGCAAAGC TGCAAGTCAA AAGCTTCCTA GCAAGGCTCC 
TATTGCCAAC AGGCCTCCTA TAAAGAGTGT AAGTGATCAA TCTCTTAGGG 
CAAATCATTC AGCTTCAAAG CAACTTTTGT CACAGAATGG GAGACCACAA 
TCCTCACAGA GTCAGAGGAT GCAGTCGACC TCGCATGGTC AGAGGCCACA 
TCAACCTGTG CAAAGTCAGT GGCCGCTGCA GTCATTGCAG GGCCGAAGGC 
CACAGCAGTC ACCACAAAAT ACAAGGCCAC AACTGATGTC GAAGAGTCAG 
AGACCGCAGC AATCATTACA GAGACAGAGA CCACAGCTAT CCTCACAAAA 
TGAGAGATTG GAATCCTCGG AGAGGCAAAG GCCACCTTCA CAAAGCTACA 
GGCCACAGTC GTCGCAAGGG CAGAGGCCTA GTTCAGTACA AGGCCGCCAG 
TACTCCGAGC AAAGAAGAAT CCAGGCAAAT GATAGAGTAA AGTCGGCAGA 
AAGGCAGATA AGGCCTCCCT CGAAACCCAT GCCATCACGA CAAATACCTT 
CCAACGGAAT GCGTGATGCC CATGCAAAGA AAAAGCAACC GATGAAACGA 
AGATTTAATG ATCTTAGCGA AGATGAGGAA GATCCGTTGG CAATGATCAG 
GAGCATGTTT AGGTATGATC CTAGTAAATA TGCAGGCAGA GATGACGATG 
ATAGCGACAT GGAAGCAGAT TTTGCTACTA TAGAAATGGA AGAGCAAAGA 
AGCGCGAGAA TTGCAAAGGA GGAGGATGAC GAGCAACTTC GCCTGATTGA 
GGAGGAAGAA AGACGTGAGC AGGAGAGGAA GAGGCGAAAG ATGGCGCGTG 
GCCGATAGTA GCAGCTAAGT TGTACAAATG CTTGAGTTAC AGCTTGAGCA 
AGGCTTGAAC TGCAATTCCA CGGTCGTACG GGCCATGGTG CTTGCAGATG 
ATAGCACGCT TTACCCCCAT TTATTTGCCG TGCGATTTCT CAAGAGATCT 
ATCAAGAAAA AAACGGCAGG GATCAAGCAA AACGGCAGGA GAACGATGCT 
CCAACGTAAT GTGAAGTGGT GTAGCTTGTG CTGAAACTGT TAGCTGTGCC 
AACTACAGAT CTTTTTGATG CTGACGCTGA TCGTGCAGAA ACTTCTCCCG 
TGAGGGTGTG GTGATGCCAA CGTCCCTACA CCTTGTCACT TTGTTGGGTT 
GTACATGATA TTCTTCCTCA TGTAGCTGAT TCGTTCTGTT GGTCGAGTAC 
TAAAGATGCC AGAAATCAAC TGGCGCCTGT CCGTGTTTGG ATTCGATTTG 
GATATACCGG TGTTCTAATA AACAATGTTT TAG

Gene models with high sequence identity

AT2G22720.3 [+] show detail - SPT2 chromatin protein
E-value: 1e-23; Score: 108.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	Chromatin SPT2	6.5e-13
HMMSmart	Chromatin SPT2	3e-40

See the detailed result >

AT2G22720.3

Model type: Protein coding
Short Description: SPT2 chromatin protein
Computational Description: SPT2 chromatin protein; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR