K33541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33541

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33541

Determination of introduced cDNA(s)

  • J013159H10 - Rice Full-length cDNAs - Original: J013159H10

    full reading [+] show sequence

    Nucleotide sequence: J013159H10 - full reading 
    GGTCGCCGTC GCGGAATTTC CTCCGCCATC GCGCGCCCTC GGTATAAATC 
    GCCGGGAGAA ATTTCTCCGA GCTCTCTCCC ACCCACCAAC CCCCCATCGA 
    GGAGACGACG ACGAGGAGGA GATGCTTCCG GGGGTGGAGC TGGCGAGGCG 
    GCGGCGGGTG CACTACCACG GCGACGGGGC GGCGGCGGGG GCAGGGTTTG 
    GGGAGCACCA CCACGGGCAC TACAACTACT TCCACCAGCA GCACCACCGT 
    CAGGCGGTGG CGAGCGCGGA GGCGGGGGCG GGCGCAGGGG GCGAGGTGAG 
    CCCCGCGGTG GCGGCGCGCA TCCGGCTCGA GGAGAAGCTG CGGGGCGCCG 
    CGGCCGCGCC CTCGTCGTCT CTCTCGAGGT GGGGCAGGCG ATTTCGCGAA 
    CGAGATGGGA GCACAACCTC CAGACAACAG AACAACCAGC AAGAGCAGCA 
    GATTCAGCTG CCCACTGAAC CCAGGCCTAC TCCCAAACAT TCGATGACCA 
    TGCTGGAGGC GCCATCAACA AGAAAAGCCC CCCGCCGCGA GATGAGGAGG 
    ACACTTTCCA AGGCCGATCT CTGCGCTGTG TGCCTCGACG AAGTGCGGGA 
    GCGACACCAG CGGGTCACCA GGCTACCCTG CTCCCACAAG TACCACTCGG 
    AGTGCGTCCT CCCCTGGCTG GCCATCCAAC CAGACTGCCC CTGCTGCAGG 
    ACGCAGGTCC CTTCGGTGGA CTCCCTCTTT GTAGCTTGAT CAGCTTGCTG 
    GAAGATTTGG CATCTTCTTC CTCTGCACAG TTTCCGAAAG AAAGGAACAA 
    AAAGAAAGGG TTTTCATTGT CTTCAGCAGA ACATGAACTG ACATAGACAC 
    CATGACAAAG TTTTGTTCTT CAGTTTTCTC TTC

    Gene models with high sequence identity

    1. AT3G02340.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-11; Score: 67.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2e-13
    HMMSmart Zinc finger, RING-type 4.7e-05
    ProfileScan Zinc finger, RING-type 11.929
    HMMPanther RING ZINC FINGER PROTEIN 1.9e-10
    Gene3D no description 1.8e-10

    See the detailed result >

    AT3G02340.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR