K33610

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33610

Determination of introduced cDNA(s)

  • J023102C01 - Rice Full-length cDNAs - Original: J023102C01

    full reading [+] show sequence

    Nucleotide sequence: J023102C01 - full reading 
    GAATTCCTAC CTCACACTTC TGCAACAAGC TTTAGCTCCA GCCACCGGAA 
    CGAGAGATCG ATACAGCTCG ATCAGCTAGC CGCATTCGCC CTCGCCGCCG 
    CCGACGATGT CGAGCCGGAG GTCGTCGCGC TCCTCCGTGT CGGAGGAGGA 
    GATCAACGAG CTCATCTCCA AGCTCCAGTC CCTCCTCCCC AGCTCCCGCC 
    GCCGCGGCGC CAACCAGGCG TCGACGACGA AGCTGCTGAA GGAGACGTGC 
    AGCTACATCA AGAGCCTGCA CCGGGAGGTG GACGACCTCA GCGACAGGCT 
    CTCCGACCTC ATGGCCGGCA TGGATCACAA CAGCCCAGGC GCCGAGATCA 
    TCCGCAGCCT CCTCCGCTAG CTCATCTCTT CTCATCTGTT CTTCCTCCTC 
    GATGATCGAT CGATCTCGTG TTATTCTACG TACATGAAGG ATGATATGAA 
    TGCAGCTCGT GCCCTGTAGC TACGTATAAA TATACACATA TGTATACATG 
    CATACAGTAC ATGATATGCA TATGCCTAGA TCTGATCTAG CTCAGTAGAA 
    AATCTACTCA TCTCGGTGTA CTACTGATGA TGATGATGAT TAAGGCATGC 
    AGCTGGCTTG ATGATCGGTA CTACTACTAC TACTTCACTT CAGTTCAGTA 
    GGGGCATTAG CTAGCTAGCT AGGGCCGGCT GCCTAATTAA GTAATTAAGT 
    AATTTATTAT TTGTAGTAGC CAGCTTGATC TCATCTCTCC TCATGAGCCA 
    TATGACATGT GGTTAAGTTA ATTAATCCTT GATGCAGTAG AGTCGTCCC

    Gene models with high sequence identity

    1. AT1G26945.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 1e-16; Score: 84.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 3.2e-07
    HMMPfam Helix-loop-helix DNA-binding domain 1.8e-05

    See the detailed result >

    AT1G26945.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.
    Computational Description
    KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT3G28857.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR