K33621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33621

Determination of introduced cDNA(s)

  • J033034F22 - Rice Full-length cDNAs - Original: J033034F22

    full reading [+] show sequence

    Nucleotide sequence: J033034F22 - full reading 
    GACCTCCTTC CCTCCTCCAT CTCGACACCT CCTCCTCGTC TCCGGCCGCC 
    GCTTCCCCCT CGCCGCCGGC GCCTCCTCGA GACCGTCGAG ATCGAGATAG 
    AGAGAGAGTG ATGGGGTGGG CGACGCGGTT CCTGGCGGCG GTCTGCTTCT 
    TCGCGGCGGG CGTCGTCTTC GCCCCCGACG TCCTCCTCGG CGCCCGCTCC 
    GGCTCCGGCT CCGGCGGCGG CGCCGCCGCG GCCGCCAAGG TGGCCCACCT 
    CCTCTGCTTC GCCACCTCAT GGGGCGCCGC CCTCTGGGCC ACCTTCATCG 
    GCGGCATCAT CATGTTCAAG AATCTGCCGA GGCACCAGTT CGGGAACCTG 
    CAGGGGAAGT TGTTCCCGGC CTACTTCATG CTCATCTCCG CCTGCGCCGC 
    CGTCTCCGTC GCCGCCTTCG CCTACCTCCA CCCGTGGAAG ACGGCGTCCA 
    CCGTCGAGCG CTACCAGCTC GGCTTCCTCC TCGCCGCCCT TGGCTTCGAC 
    CTCTCCAACC TGCTCGTGTT CACCCCCATG ACCATCGAGA TGATGAAGAA 
    GAGGCACAAG ATTGAGAGGG ACCTGAGCAT TGGTGAGGAG GTTGGGTGGT 
    CGAAGAATGT TCAGGTGGCA AAAAACAACC CTACCCTTGC CGCAATCAAC 
    AAGAAGTTTG GGATGATCCA CGGGCTCTCG TCTTTGGCCA ACATCATGTC 
    ATTCGGCAGC CTAGCCATGC ATTCCTGGTA CCTTGCTAGC AAGCTTGAGA 
    TGTGAAGTGA ACAAACACCC TTGACCAACA TTCAGTTGAA TCAGATCTGA 
    TTGCATCACA ATATTAATGT GGCAAAGCCT CATTTGGAGA GCTTGCAAAT 
    ATATTTACGT GTACAATGAT TCGACTCGAG ATTAGTTGTA CTTAAAATAA 
    TGTACAGAAT CCACGCATTT CTCGCCAGTT TATTATAAGT TCATGAACC

    Gene models with high sequence identity

    1. AT3G62580.1 [+] show detail - Late embryogenesis abundant protein (LEA) family protein
      E-value: 9e-67; Score: 250.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G62580.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant protein (LEA) family protein
    Computational Description
    Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR