K33630

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33630

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33630

Determination of introduced cDNA(s)

  • J023145H12 - Rice Full-length cDNAs - Original: J023145H12

    full reading [+] show sequence

    Nucleotide sequence: J023145H12 - full reading 
    GGGGGAGAGA GTGGCTTTCG CTGCAAAAAT AATAAGAAAA GAAAAGAAAA 
    AAAAACAAAA ACGAAAAGGC CCCTCGGCCT CGCCATCGCC AGCCGCCGCC 
    GACGAGCTCC ATCCGGCGAG CAGCGGTGGC TGCCGCCGGT CCGCCCGCCC 
    GTGCCAAGTG TTGGGTGTTG ATTTGTTCAA GTCTGGAGGA AATTCGAGCG 
    AAATGGCTTC TTCCCTGAGC AAATCCGACA AGAAGAAGGT GCTGGATTTT 
    GCGGCATGGA GTTTCAACAT CACCACGTCT GTTGGAATCA TCATGGTCAA 
    CAAGGCTCTG ATGGCTACGC ATGGATTCAG TTTCGCCACA ACCTTAACTG 
    GCCTTCATTT TGTGACAACC ACCTTGATGA CTATCGTGTT TCGGTGGTTA 
    GGCCTCAGCC AGCCCTCCCA CTTACCACTG CCAGATCTGA TTAAATTTGT 
    GATCTTTTCG AACTTGTCGA TTGTTGGAAT GAATGTGAGC TTGATGTGGA 
    ACTCTGTGGG GTTTTATCAG ATAGCAAAGC TCTGCATGAT ACCTGCATCA 
    TGTCTCCTGG AGGTTGTCTT CGATCATGTA CATTATTCTC GGGACACAAA 
    GCTGAGCATA ATGGTTGTGC TTATAGGTGT TGCGGTCTGC ACAGTTACTG 
    ATGTCAGTGT AAATGCAAAA GGTCTGGCTG CTGCTGTTAT AGCTGTTTGG 
    AGCACAGCTT TGCAACAATA TTATGTTCAT TTTCTCCAAC GAAAGTACTC 
    TCTGAACTCA TTCAACCTCC TGGGTCACAC TGCTCCAGCC CAAGCAGGAT 
    CCCTTCTGCT AGTGGGGCCC TTTGTAGATT TCTTGTTGAC AGGCAAAAGG 
    GTGGATCACT TTGGTTTCAC ATCGATTGCT TTGTTTTTCC TGACTCTCTC 
    ATGTGTCATT GCCATTGGTG TTAATCTGAG CCAATTCATC TGCATTGGTC 
    GGTTTTCTGC CGTATCCTTC CAAGTCCTGG GCCACATGAA GACAGTGCTC 
    GTGTTGTCCC TTGGGTTTCT CTTCTTTGGC AAGGAAGGTC TGAATTTTCA 
    GGTAGTCCTT GGGATGATCC TCGCTGTTGT TGGGATGATA TGGTATGGGA 
    ACGCATCAGC GAAACCAGGT GGCAAAGAGC GGCGGAGCGT TCTTCCAGTA 
    AGGTCTGAGA AGCCTAGTGG AGCATTAGAC GAGAAGGATG GCAGTGAGAA 
    ATAGTATGTG ATCTGCGATT TATATGACAA TTTCTTCTGT GAAGTTTTTC 
    TGGTGATGCA AGTATGATAT ACAAAGGAAA CCTTGCCAGG CGTTTTCGTT 
    TACCGCTGAA GCCATAGATT CGCCATCTAG AAACTCATCA TTGTCATAGC 
    TATAGGATAC AGTTAATATA CATTTGTCAT CGCATTTTTT TCGTTCTCCT 
    GTACATTCCT TATGGGGGAG ATGGCATAGA TGTTCTACAG GGTTGCAAGA 
    CAGTTGTCCG AAAAGACAAT GTAGTAATTG TTTGTGATAA CACGGAGTTC 
    TACATTTCC

    Gene models with high sequence identity

    1. AT4G09810.1 [+] show detail - Nucleotide-sugar transporter family protein
      E-value: 9e-120; Score: 427.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Multidrug resistance efflux transporter EmrE 0.002
    superfamily Multidrug resistance efflux transporter EmrE 0.019
    HMMPanther SOLUTE CARRIER FAMILY 35 1.1e-82
    HMMPfam Protein of unknown function DUF250 1.2e-28

    See the detailed result >

    AT4G09810.1

    Model type
    Protein coding
    Short Description
    Nucleotide-sugar transporter family protein
    Computational Description
    Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR