K33635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33635

Determination of introduced cDNA(s)

  • J033093B13 - Rice Full-length cDNAs - Original: J033093B13

    full reading [+] show sequence

    Nucleotide sequence: J033093B13 - full reading 
    GAGCCTTCCA GCCAAACTGA AGTCACGACT CGCGACATCT GAAGTTGACA 
    CACCTCCAAC CATTACTTTC TGTTCCAGTG TTGCACACAC CTCCGGCCAT 
    TTGGGCGTCA TGAAGCAAAC CGTCGTCCTG TACCCCGGCG GCGGCGTCGG 
    CCACGTCGTC CCCATGCTGG AGCTCGCCAA GGTCTTCGTC AAGCACGGGC 
    ACGACGTCAC CATGGTGCTG CTGGAGCCGC CCTTCAAGTC GTCCGACTCC 
    GGCGCCCTCG CCGTCGAGCG CCTCGTCGCC TCCAACCCTT CCGTCTCCTT 
    CCACGTCCTC CCGCCACTCC CCGCCCCCGA CTTCGCCAGC TTCGGCAAGC 
    ACCCGTTCCT CCTCGTCATC CAGCTCCTGC GCCAGTACAA CGAGCGGCTC 
    GAGAGCTTCC TCCTCTCCAT CCCTCGACAG CGCCTGCACT CCCTCGTCAT 
    CGACATGTTC TGCGTCGACG CCATCGACGT GTGCGCAAAG CTCGGCGTGC 
    CGGTGTACAC GTTCTTCGCC TCGGGCGTCT CGGTGCTGTC CGTCTTGACC 
    CAGCTCCCAC CGTTTCTTGC CGGTAGGGAG ACGGGCCTGA AGGAGCTTGG 
    CGACACGCCG CTTGATTTCC TCGGTGTTTC GCCGATGCCG GCGTCTCATC 
    TCGTCAAGGA ATTGCTCGAG CATCCGGAGG ACGAGTTGTG CAAGGCCATG 
    GTGAACCGCT GGGAGCGCAA CACGGAAACC ATGGGCGTCC TGGTGAACTC 
    GTTCGAATCG TTGGAGAGCC GGGCGGCTCA GGCGCTCAGG GACGACCCGC 
    TCTGCGTCCC AGGCAAGGTG CTGCCTCCGA TCTACTGCGT CGGGCCTTTG 
    GTCGGCGGCG GCGCGGAGGA GGCGGCCGAG AGGCACGAGT GCCTCGTCTG 
    GCTCGACGCT CAGCCGGAGC ACAGCGTCGT GTTCCTCTGC TTCGGGAGCA 
    AGGGCGTGTT CTCCGCGGAG CAGCTCAAGG AGATCGCCGT CGGCTTGGAG 
    AACTCCAGGC AACGGTTCAT GTGGGTCGTG CGCACGCCGC CGACAACCAC 
    CGAAGGCTTG AAGAAGTACT TCGAGCAACG CGCGGCGCCG GACCTCGACG 
    CGCTCTTCCC GGATGGGTTC GTGGAGCGTA CCAAGGACCG TGGCTTCATC 
    GTCACGACGT GGGCGCCGCA GGTGGACGTG CTCCGCCACC GGGCGACCGG 
    CGCGTTCGTG ACGCACTGCG GGTGGAACTC GGCGCTGGAG GGCATCACGG 
    CGGGGGTGCC GATGCTGTGC TGGCCGCAGT ACGCGGAGCA GAAGATGAAC 
    AAGGTGTTCA TGACGGCGGA GATGGGCGTC GGGGTGGAGC TGGACGGGTA 
    CAACTCGGAC TTTGTCAAAG CGGAGGAGTT GGAGGCCAAG GTGAGGCTGG 
    TGATGGAGTC GGAGGAAGGG AAGCAGCTCA GGGCTCGTTC GGCTGCGCGG 
    AAGAAGGAGG CAGAGGCGGC GCTGGAGGAA GGGGGCTCGT CGCACGCTGC 
    GTTCGTCCAG TTCCTGTCCG ATGTGGAGAA TCTTGTCCAG AACTAACTGA 
    CGAAAATTTG CAGATGCCCA GCATCTTGGC CACAAGTGAC GAAAATTCTC 
    AGATGCTCTT TATTTGCCTG GGGACCGGGG GCCCTTTCAA CGATAATCAT 
    TTAAGAACTA CTTGTGTACC TTATTTGTTG TTAATAAAGC AACGTACTAG 
    AATGGCCGCG ATGATATTTA TCCCTTGTCT TTATTATCAG AGTATATGGA 
    TAAAATCTAA TTGTATGGTT TGTTATGGT

    Gene models with high sequence identity

    1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
      E-value: 2e-80; Score: 297.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UDP-GLUCOSYLTRANSFERASE 7.1e-106
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 7.1e-106
    Coil coiled-coil 0
    Gene3D no description 3.1e-13
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.6e-30
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.7e-51

    See the detailed result >

    AT3G16520.3

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 88A1
    Computational Description
    UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR