K33647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33647

Determination of introduced cDNA(s)

  • J033123N15 - Rice Full-length cDNAs - Original: J033123N15

    full reading [+] show sequence

    Nucleotide sequence: J033123N15 - full reading 
    TACTTTCACT AAACCCCATC CCCTTCCTCT CGCCCATGCT CCTCCGGTGA 
    GCAGCGGCGG CGGCGACGGC GAGGTCTAGA CTCTGGAGAC GTGTGGCTGT 
    CGAAATGAAT CAACTGAGTG CCTCCGCAAT GCTCTCCCGC GCAGCCTCTC 
    TCCGCCGCGC CGCGGCGGCG GCCTTCTCCA CCGCCGCGGC GAGGCCGGAG 
    ACCGGGCTGT ACGGCTTCGA TGTGCTGCGC ACGGCCAAGG GCTTCCGCCG 
    CTTCGTCGAC GACGCCATCG AGAGGTCGGA CGAGCTCGTG GCCTACATCG 
    GGCAGCTGCC GCCGCCCGCG GAGATTGTCC GCGCCATGGA TGAGATATCG 
    AACACTGTCT GCTCAGTTAT TGATTCGGCA GAGCTGTGCA GGAATACGCA 
    CCCAGATAAG GAATTTATGG ATGAGGCAGA TAAGGCATCA ATGAGGATTT 
    ATGAACATCT TCAATATCTG AATACCAATA CTACTTTGTA CAATGCAATA 
    CTTAAAGCTG AGAGCGAAGG TGTCATGCTC ACAGAGGAAG CTCGAAGGGC 
    AGCCACCACC TTGCGTGTTG ACTTTGAGAA AGGGGGAATT CATCTTCCTA 
    AAGATAAACT CGAACATGTT AATCATCTGA ACCTTGAGAT TGCCCAGCTG 
    GGTCGAAAGT TCAGTGAAAA TGTTATGAAC AAACCAGGTT TTGTGGATAT 
    ATATCCAGCT TCGCGCATTC CAAGAAATAT GCAACGCCAT TTTAAATCCA 
    TTCACCGTAT TAAACCTTGG GGCGATGAGG AACAAAGAAA TCAAATGGAC 
    ACTACAAAGC AAAAGGGTCT AAGGATAGTC ACTGATTCAG GAACTCTATC 
    AACAGCACTG AGATGGGTCT CAGATGAGGA AATCAGGAAA CAGGTATACC 
    TGGTAGGAAA CTCTGAACCT CGTGAAAACA TTACAGTTCT TGGCAAGCTT 
    ATAAATGCAC GTGACGAGCT TGCGAAGACT ATGGGATGCA AATCATATGG 
    TGATTTTGCT ATTCGTCCTA ACATGGCTGC ATCTGTAGAT GTCGTGATGT 
    CATTTCTCAA AGATTTGAGT GGCGTGGTTA GGCATAAAGC TGGTGAGGAA 
    TTTAAACGTA TACAGGACTT CAAGAGAAAT GTATGCAATG AAAAGAGTGC 
    TAAACTTGAA CCCTGGGATG AGGATTACTT CATTGGAATG ATGAAATCAG 
    CTGTACATAA CCTGGATGTC TCAGTGGTTG CAGCATACTT TCCATTGTCC 
    CAGTGCCTAA AGGGCTTAAA CGTGCTGGTG GAATCATTAT TTGGTGCCAC 
    ATTTCATCAA ATTCCTATGG GGGACGGCGA GTCATGGCAT CCAGATGTGA 
    TGAAGTTGTC TCTCCATCAT CCTGATGAGG GCAATTTAGG ATTTATGTAT 
    CTTGATCTGT ACTCCAGAAA GGGTAAATAT CCAGGGTGTG CTCACTTTGC 
    TATCAGAGGG GGGCGACGAT TGCAAGACTC AAATTACCAG CTTCCAATCG 
    TTGCTCTAGT TTGCAATTTT TCAAGTTCGA GCAAAATAAT GGCAAGGCTT 
    AACCATTGGG ATGTTGAAAC TCTGTTTCAT GAGTTTGGCC ATGCCCTTCA 
    TTCTCTACTC TCAAGAACGG AGTATCAACA TTTCTCTGGT ACTAGAGTTG 
    CTCTTGATGT GGCTGAAATG CCATCAAACC TCTTTGAGTT TTATGCATGG 
    GATTATCGTG TCTTGAGGAA ATTTGCTGTA GATGAAACAA CTGGTGATCC 
    AATACCAGAA AAGTTGGTAA AGGCACTTAA TGCTTCTCGG AACATGTTTC 
    CAGCAACGGA GCTGCAGCGT CAGATTTTCT ATTCTATAAT GGACTTGACT 
    TTGTTTGGGG AGCAAGGATC CAAGCCAATG GACACAATTT CTACTGTAGC 
    TGATTTGAGG AGAAAGCATA CAAGTTGGAA ATGTGTAGAA GGCACACACT 
    GGCATACTAG ATTTACTCAT CTGATAAATT ATGGCGCTGG CTACTATAGT 
    TATCTTTATG CTAGATGTTT TGCCACAACT ATATGGCAAG AAGTATGCCA 
    AGGTGATCCA TTATCCCGCA GCACGGGTAG TGCACTTAGG GACAAATTTT 
    TGAAGCATGG TGGAGCTAAG GATCCTTCTG CCCTGTTAAA GGATTTCGTA 
    GGTGATTCCA TTATTATAAA CTCTGGAGGA GGAATAATCC CTGACATTAG 
    CTCCTTGTGT AAAGAAGTCG GTTTGTGAAA TACCATTGGG AGTGGAGATT 
    GGGATCATTA TTTTTGACAT TGAGATGGGT TAAAGGGTCA AAGACTCATG 
    ATATCATGAG TCAGGAGCTT GATCTGCCAC AGGGCTGCAG GATCTAGTTG 
    AAGGTCAAGC TGAAAAAAAT AATAGTAGAT TCTTGACAAA GAACTGATGA 
    ATTGGTTCTC AATACAGGAT TGCAGGTTAG ATTAGTTGGG TGGATCCTGT 
    TTGACCATTG CTGAATCTTC GATTTTAACT TGCTGCTGCT GCTGCTGCAA 
    GGGTGGTTTA GTTCCCTGTC AGATGATTTT TCGCATTTAC TCCGATTGTT 
    CGGAACTGTT GTTCCAAAGC TACAAAGTGG CTGTGCCTGT AATATTGACC 
    CAGGTTAATC TTCATAGCCC ATCACATGTA ATAGTTCTCT AAAGTGATTA 
    TAAGAGTGAG AGATGTGCCC ATATGATCTT TTTTGCATTC TTAGTTGGTC 
    TCATGGATAG AAAGCATGTT TGAGGACC

    Gene models with high sequence identity

    1. AT5G51540.1 [+] show detail - Zincin-like metalloproteases family protein
      E-value: 0; Score: 844.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.1e-87
    superfamily Metalloproteases ("zincins"), catalytic domai 1e-177
    HMMPanther MITOCHONDRIAL INTERMEDIATE PEPTIDASE 2e-147
    HMMPanther PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 2e-147
    HMMPfam Peptidase M3A/M3B, thimet/oligopeptidase F 7.7e-115

    See the detailed result >

    AT5G51540.1

    Model type
    Protein coding
    Short Description
    Zincin-like metalloproteases family protein
    Computational Description
    Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT1G67690.1); Has 5499 Blast hits to 5482 proteins in 1556 species: Archae - 6; Bacteria - 3417; Metazoa - 330; Fungi - 489; Plants - 134; Viruses - 0; Other Eukaryotes - 1123 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR