K33722

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33722

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
T2  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Original: K33722

Determination of introduced cDNA(s)

  • J013116I02 - Rice Full-length cDNAs - Original: J013116I02

    full reading [+] show sequence

    Nucleotide sequence: J013116I02 - full reading
    GAATGCCCCT CCCCCTTGAC CGGCCACCAC AATGCGGCCG CCCTCGTCGT 
    CGGCGACGCC CGGGACGGGC CGGGTGTCGG CGTTCACGAT GCGCGCGGTG
    GCGCGCATGT CGAGGGCGCG GTGGTTCATC TTCCTGAGGC GGGTGTACCA
    GTACCAGAAC GGCCCGAGGT CCGACCTGGG CTCCAACCCC TTCAACTCGC
    CCGGCTGGCT CGCCCTCGAG CTCGGCGTGA TCATGGCGCA GATGGTCGTC
    ACCACCGCCG TCGTCGCCAC CTCCCCCAAG GAGCGCCCCG CGTGGCCGCT
    CCGGGTTTGG GTCGCCGCCT ACAACGTGGG CAACGTGCTC AGCCTCCCCC
    TCCTCTACTG GCGCCACCGG CATTCCTCCT CCGGCGCCCG CGGCGGCACG
    CTCTCCGACG ATCCCGAGAT GCACGGCGCC AACGACCCTC TAAGGAACAG
    GTCGTATCTG ATGAACAAGG CACGGGCGTT CCTGGAGCTG TTCTTCGCGA
    TGTGGTTCGT GATGGGCAAC GTGTGGGTGT TCGACGCGCG GCTCGGGTCG
    TTCCACCGCG CGCCGAGGCT GTACGCGCTC TGCATCGGCC TCCTCGCATG
    GAACGCCGTC GTCTACTCGC TCCCATTCCT CCTCTTCCTC CTGCTCTGCT
    GCTTCGTCCC GGCCGTCGGC TACGCGCTCG GGTACAACAT GAACTCCGCG
    TCCGTCGGCC GGGGCGCCTC CGACGAGCAG CTCGCCGCGC TGCCGCAGTG
    GCGGTTCAAG GAGCCGGCCG ACGCGCCGAG AGACCGCGAC CACGACGATC
    AGGAGTGCTG CATATGCCTG GCTCAGTACA AGGAGAAGGA GGAGGTGAGG
    CAGCTGCCGT GCACGCACAT GTTCCACCTG AAATGCGTGG ACAGGTGGCT
    CAGGATCATC TCCTCTTGCC CTCTCTGCAA GCAAGAGCTC AGCTAGAAAA
    ACAAGCTGAC ATGAATACGG AGCTACTGAT ACCGCGCCTT CCGACGCATG
    CGTCGCACCT CACGGAAGAA GAAAAAGAAA AGAAAAAAAA ACCCTGGCAC
    GCCAACCATG CGTGCACTGA CCTAGTTCGA TATTGCTGAT GACGGCACGA
    TGAATATTTA TGCATACACT TGCATGTGAA AAAGATATGC TTGGATTAAT
    TAGGCTAGGT AGACAAGCGG GAAATGTGTA AAAGAGTTTT TTTGTGTGTG
    TGTGTGTGTG TGTGTTGTTT GCGGTGTTGT TGCATCTCTC GAATGTGGTC
    GATCGAGATG CGCGTGTACG TAGTTTTTTT CAGCAGAAAC CAAACGAGAA
    CATATACCAG GGTTTGCGCT CGTGCTCCAG CGAATGCCAA CCCAAAGGTA
    TTCGGCCCGG TCGAAACTAC TACAGTACTG TATTCTAGGC CTGGCTCAGA
    GTGGGCCAAC ATTTTCGGCC CAGTTTATCG

    Gene models with high sequence identity

    1. AT5G55970.2 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-85; Score: 314.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.6e-12
    superfamily RING/U-box 3.5e-14
    ProfileScan Zinc finger, RING-type 12.386
    HMMPanther RING FINGER PROTEIN 38 3.7e-19
    HMMPanther RING FINGER PROTEIN 6/12/38 3.7e-19
    HMMSmart Zinc finger, RING-type 1.5e-06
    HMMPfam Zinc finger, C3HC4 RING-type 5.4e-06

    See the detailed result >

    AT5G55970.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033128L17 - Rice Full-length cDNAs - Original: J033128L17

    full reading [+] show sequence

    Nucleotide sequence: J033128L17 - full reading
    GAAATCTCCC TCACCACAGG GCACGATACC GCCGTCCGTT CGCGGCGCGA 
    CCCTTCGCCG CCGCGCCGCC GCGCCGGCGC TATGCAGCGC CTCCAAAAGC
    AGCTCCTTCC CGCCCTGCGC GCCGCCTTCC CTCTCCCTGC CTCCCACTTC
    AGCAGCCGCC TTCTCTCCGC CTCCACCGCC ACCTTATCCC CCACCCGCTT
    CGTCGACGAG GACGCCCTCG TCGCCGCCTG CGGCCTCACC GGAGCCGAAG
    CCCTCAAGGC CTCGAAGCGT CTACAGAAGG TACCCTCAAA TCTAGACGCC
    GCCCTCACCT TCCTCGCCTT TCTCGCCGAC TTCCGCCTCT CCAAAGACGA
    CATCGCCGCC GCAAGCTCAC GGTACCCGCG GTTCCTCCAT CTCAAGGTGG
    ACGAAACCCT AACCTCCCAA GTAGCCCGGC TCCGGGATAT CGGCCTATCC
    ACTCCCGAGA TTGGCCGCCT CATTACCATC GCCCCCTGCA TCCTCTCCAA
    TCCTCGCACG ATCTCCCGCC TTGAATTCTA CCTCTCCTTT TTGGGCTCCT
    ACCCCAGGGT GCACTCCGCC CTTCGGAACA ATTCCTCCCT TCTACGGCGA
    AACAACATCG AGAGTGAGGT CAAGCCCAAC ATTGCATTCC TGGAGCAGTG
    CGGCCTAACT ACTTGTGATA TTGCCAAGAT CCTCATGTCT GGCTCTAGGA
    TACTCATTAT GCAGCCAGAG CATGTCAAGG AAATTGTGGC GTGTGCAGAC
    AAGTTCGGTA TGCCCCGTGA GTCAGCTGGT TTCAGGTATG CCCTGATGGC
    TGTTACCGGC ATCAGCCCAG TGAGGGTCAG CGCAAACTTG ATTTCTTGAG
    GATGGTTATT GGATGCTCAG ATGCCCAGCT ACACATTGCG GTGTCTAGGT
    TTCCACTAAT CCTGACATAC TCAGAAGTTA AGCTGAGCCG CTCACTGGAA
    TTCCTGAAAG CGGAGGTTGG GTTGGAGCCT CAGTACATTG TGCTCCGGCC
    AGCATTGCTC GGCTATAGCA TTCAGAAACG GCTGATGCCG CGTTATCATG
    TCATGAAGGT TCTGAATGAA AAGGGCCTGC TGAAGAAAGA CACTGATTTT
    TACTCTATGG TTAAAATAGT TGAAGAGAGC TTTTTTAAGA AGTTCCTTCT
    CCCATACCAC AGGTCTGTTC CAGGACTTGA AAAAGCTTAT CTGGCTGCCC
    GTGAAGGGAA AATGTTTCCT GAAATCTAAA ACAGAGATGC TGGAGGTTTA
    TTCTGCCTAG GAACTTGATA ATGTTCTGCA TTTTACATCT TGCTCAGTTC
    TTAGATGATT TCTAGCGATC TGTATTTGTG ATTTCATCTG TGCTTTTTGA
    GACAAACATC TAATTTTAGT GCACTCTTGT TCTCATTTT

    Gene models with high sequence identity

    1. AT5G64950.1 [+] show detail - Mitochondrial transcription termination factor family protein
      E-value: 4e-17; Score: 36.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochodrial transcription termination factor-related 4.8e-09
    HMMPfam Mitochodrial transcription termination factor-related 1.5e-15
    HMMSmart Mitochodrial transcription termination factor-related 0.048
    HMMSmart Mitochodrial transcription termination factor-related 11

    See the detailed result >

    AT5G64950.1

    Model type
    Protein coding
    Short Description
    Mitochondrial transcription termination factor family protein
    Computational Description
    Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR