K33722

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
T2
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)

Invisible phenotypes

Silique::Shape::narrow

Original: K33722

Determination of introduced cDNA(s)

J013116I02 - Rice Full-length cDNAs - Original: J013116I02

full reading [+] show sequence

GAATGCCCCT CCCCCTTGAC CGGCCACCAC AATGCGGCCG CCCTCGTCGT 
CGGCGACGCC CGGGACGGGC CGGGTGTCGG CGTTCACGAT GCGCGCGGTG 
GCGCGCATGT CGAGGGCGCG GTGGTTCATC TTCCTGAGGC GGGTGTACCA 
GTACCAGAAC GGCCCGAGGT CCGACCTGGG CTCCAACCCC TTCAACTCGC 
CCGGCTGGCT CGCCCTCGAG CTCGGCGTGA TCATGGCGCA GATGGTCGTC 
ACCACCGCCG TCGTCGCCAC CTCCCCCAAG GAGCGCCCCG CGTGGCCGCT 
CCGGGTTTGG GTCGCCGCCT ACAACGTGGG CAACGTGCTC AGCCTCCCCC 
TCCTCTACTG GCGCCACCGG CATTCCTCCT CCGGCGCCCG CGGCGGCACG 
CTCTCCGACG ATCCCGAGAT GCACGGCGCC AACGACCCTC TAAGGAACAG 
GTCGTATCTG ATGAACAAGG CACGGGCGTT CCTGGAGCTG TTCTTCGCGA 
TGTGGTTCGT GATGGGCAAC GTGTGGGTGT TCGACGCGCG GCTCGGGTCG 
TTCCACCGCG CGCCGAGGCT GTACGCGCTC TGCATCGGCC TCCTCGCATG 
GAACGCCGTC GTCTACTCGC TCCCATTCCT CCTCTTCCTC CTGCTCTGCT 
GCTTCGTCCC GGCCGTCGGC TACGCGCTCG GGTACAACAT GAACTCCGCG 
TCCGTCGGCC GGGGCGCCTC CGACGAGCAG CTCGCCGCGC TGCCGCAGTG 
GCGGTTCAAG GAGCCGGCCG ACGCGCCGAG AGACCGCGAC CACGACGATC 
AGGAGTGCTG CATATGCCTG GCTCAGTACA AGGAGAAGGA GGAGGTGAGG 
CAGCTGCCGT GCACGCACAT GTTCCACCTG AAATGCGTGG ACAGGTGGCT 
CAGGATCATC TCCTCTTGCC CTCTCTGCAA GCAAGAGCTC AGCTAGAAAA 
ACAAGCTGAC ATGAATACGG AGCTACTGAT ACCGCGCCTT CCGACGCATG 
CGTCGCACCT CACGGAAGAA GAAAAAGAAA AGAAAAAAAA ACCCTGGCAC 
GCCAACCATG CGTGCACTGA CCTAGTTCGA TATTGCTGAT GACGGCACGA 
TGAATATTTA TGCATACACT TGCATGTGAA AAAGATATGC TTGGATTAAT 
TAGGCTAGGT AGACAAGCGG GAAATGTGTA AAAGAGTTTT TTTGTGTGTG 
TGTGTGTGTG TGTGTTGTTT GCGGTGTTGT TGCATCTCTC GAATGTGGTC 
GATCGAGATG CGCGTGTACG TAGTTTTTTT CAGCAGAAAC CAAACGAGAA 
CATATACCAG GGTTTGCGCT CGTGCTCCAG CGAATGCCAA CCCAAAGGTA 
TTCGGCCCGG TCGAAACTAC TACAGTACTG TATTCTAGGC CTGGCTCAGA 
GTGGGCCAAC ATTTTCGGCC CAGTTTATCG

Gene models with high sequence identity

AT5G55970.2 [+] show detail - RING/U-box superfamily protein
E-value: 1e-85; Score: 314.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.6e-12
superfamily	RING/U-box	3.5e-14
ProfileScan	Zinc finger, RING-type	12.386
HMMPanther	RING FINGER PROTEIN 38	3.7e-19
HMMPanther	RING FINGER PROTEIN 6/12/38	3.7e-19
HMMSmart	Zinc finger, RING-type	1.5e-06
HMMPfam	Zinc finger, C3HC4 RING-type	5.4e-06

See the detailed result >

AT5G55970.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033128L17 - Rice Full-length cDNAs - Original: J033128L17

full reading [+] show sequence

GAAATCTCCC TCACCACAGG GCACGATACC GCCGTCCGTT CGCGGCGCGA 
CCCTTCGCCG CCGCGCCGCC GCGCCGGCGC TATGCAGCGC CTCCAAAAGC 
AGCTCCTTCC CGCCCTGCGC GCCGCCTTCC CTCTCCCTGC CTCCCACTTC 
AGCAGCCGCC TTCTCTCCGC CTCCACCGCC ACCTTATCCC CCACCCGCTT 
CGTCGACGAG GACGCCCTCG TCGCCGCCTG CGGCCTCACC GGAGCCGAAG 
CCCTCAAGGC CTCGAAGCGT CTACAGAAGG TACCCTCAAA TCTAGACGCC 
GCCCTCACCT TCCTCGCCTT TCTCGCCGAC TTCCGCCTCT CCAAAGACGA 
CATCGCCGCC GCAAGCTCAC GGTACCCGCG GTTCCTCCAT CTCAAGGTGG 
ACGAAACCCT AACCTCCCAA GTAGCCCGGC TCCGGGATAT CGGCCTATCC 
ACTCCCGAGA TTGGCCGCCT CATTACCATC GCCCCCTGCA TCCTCTCCAA 
TCCTCGCACG ATCTCCCGCC TTGAATTCTA CCTCTCCTTT TTGGGCTCCT 
ACCCCAGGGT GCACTCCGCC CTTCGGAACA ATTCCTCCCT TCTACGGCGA 
AACAACATCG AGAGTGAGGT CAAGCCCAAC ATTGCATTCC TGGAGCAGTG 
CGGCCTAACT ACTTGTGATA TTGCCAAGAT CCTCATGTCT GGCTCTAGGA 
TACTCATTAT GCAGCCAGAG CATGTCAAGG AAATTGTGGC GTGTGCAGAC 
AAGTTCGGTA TGCCCCGTGA GTCAGCTGGT TTCAGGTATG CCCTGATGGC 
TGTTACCGGC ATCAGCCCAG TGAGGGTCAG CGCAAACTTG ATTTCTTGAG 
GATGGTTATT GGATGCTCAG ATGCCCAGCT ACACATTGCG GTGTCTAGGT 
TTCCACTAAT CCTGACATAC TCAGAAGTTA AGCTGAGCCG CTCACTGGAA 
TTCCTGAAAG CGGAGGTTGG GTTGGAGCCT CAGTACATTG TGCTCCGGCC 
AGCATTGCTC GGCTATAGCA TTCAGAAACG GCTGATGCCG CGTTATCATG 
TCATGAAGGT TCTGAATGAA AAGGGCCTGC TGAAGAAAGA CACTGATTTT 
TACTCTATGG TTAAAATAGT TGAAGAGAGC TTTTTTAAGA AGTTCCTTCT 
CCCATACCAC AGGTCTGTTC CAGGACTTGA AAAAGCTTAT CTGGCTGCCC 
GTGAAGGGAA AATGTTTCCT GAAATCTAAA ACAGAGATGC TGGAGGTTTA 
TTCTGCCTAG GAACTTGATA ATGTTCTGCA TTTTACATCT TGCTCAGTTC 
TTAGATGATT TCTAGCGATC TGTATTTGTG ATTTCATCTG TGCTTTTTGA 
GACAAACATC TAATTTTAGT GCACTCTTGT TCTCATTTT

Gene models with high sequence identity

AT5G64950.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 4e-17; Score: 36.20

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	4.8e-09
HMMPfam	Mitochodrial transcription termination factor-related	1.5e-15
HMMSmart	Mitochodrial transcription termination factor-related	0.048
HMMSmart	Mitochodrial transcription termination factor-related	11

See the detailed result >

AT5G64950.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR