K33736

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33736

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33736

Determination of introduced cDNA(s)

  • J023149K03 - Rice Full-length cDNAs - Original: J023149K03

    full reading [+] show sequence

    Nucleotide sequence: J023149K03 - full reading 
    GATCTCGTGT GAATTGTGAT CTCTCCACCA CCATCACCAC CACCACGACG 
    CTGCAGGCAG AGAGGAGCAC GCGGCCCCTG TGATCTCCGT GCCAAAATCC 
    TCGATCCCCC GCCGCGGAAT CCAGCAGAGG GACTGAATTT TGCAATTCTC 
    AGCCATGGGT TCAGTTGTGG ATGCTCCAGT GGTTGTGGAG GGGGTTGCTG 
    AGAACATGTT GGGTGATAAG AAAGTTACAG TTGTATTTGT TCTAGGTGGT 
    CCTGGAAGTG GAAAAGGCAC ACAGTGTGCC AACATTGTGG AACACTTTGG 
    ATTCACCCAC TTAAGTGCTG GAGACCTTTT GCGTGCAGAG ATAAAATCTG 
    GTTCTGAGAA TGGAACTATG ATTGAGAACA TGATAAAGGA GGGGAAGATT 
    GTTCCGTCAG AGGTTACTAT AAAGCTCTTG CAAGATGCCA TGATTAAAAA 
    TGAGAATGAT AAGTTTCTAA TCGATGGGTT CCCAAGGAAT GAAGAGAATC 
    GTGCTGCCTT CGAGAATGTT ACAAAAATTT CCCCTGCATT TGTGCTATTT 
    TTTGACTGTT CTGAAGAAGA GATGGAAAGA CGTCTTTTGG GACGCAATCA 
    GGGTAGAGTT GATGACAACA TTGAGACCAT TAGGAAAAGA TTCAAAGTTT 
    TTGTTGAATC AAGTTTGCCT GTAATTGAGC ACTACAATGC GAAGAACAAA 
    GTTAAAAAGA TTGATGCTGC AAAACCAATT TCTGAAGTGT TTGAAGATGT 
    CAAGCCATTT TTGCCCCATA TGCTAAGGTT GAATAGAGAT AAAAAAAGGA 
    CCACAGAGGG CACAAATGGT GGCGTGCTGT CAGAAAAGGC CTTGCTCGAG 
    TGTGACTATA TATCTGTGAT TAAGAACCAT TGATATAGAA GAAAAGTTTT 
    TCTTGGCTCC CATGAGCTAC CTAATTATCA GTAGGCAATT CGTTTCGTTA 
    CCAGCAATAA GTAGATCCGA GTCTCGCTGC CCCCATGGTG TACCGGCGTG 
    TGTCCTCTGT AATGCTGTAC TGTTGTATAA TTTACCTCAT GGATGATC

    Gene models with high sequence identity

    1. AT5G26667.3 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 1e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Adenylate kinase 2.8e-29
    FPrintScan Adenylate kinase 2.8e-29
    FPrintScan Adenylate kinase 2.8e-29
    FPrintScan Adenylate kinase 2.8e-29
    FPrintScan Adenylate kinase 2.8e-29
    HMMTigr UMP-CMP kinase 2.2e-126
    HMMPfam Adenylate kinase 2.1e-49
    superfamily P-loop containing nucleoside triphosphate hyd 2.1e-47
    Gene3D no description 1.1e-57
    PatternScan Adenylate kinase 0
    HAMAP Adenylate kinase 22.917
    HMMPanther UMP-CMP KINASE (UMP-CMPK) 1.1e-113
    HMMPanther Adenylate kinase 1.1e-113

    See the detailed result >

    AT5G26667.3

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Curator Summary
    encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase.
    Computational Description
    PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 14097 Blast hits to 13900 proteins in 4949 species: Archae - 110; Bacteria - 9093; Metazoa - 1254; Fungi - 484; Plants - 467; Viruses - 0; Other Eukaryotes - 2689 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR