K33743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33743

Determination of introduced cDNA(s)

  • J023073H02 - Rice Full-length cDNAs - Original: J023073H02

    full reading [+] show sequence

    Nucleotide sequence: J023073H02 - full reading 
    GAGTTCTTCT CCTTTCTCCG TGACCCGAGC ACCCTGTGCG GCGGTGGCCT 
    TGCAGTGACG GCGGCGCCTC CTCCTCGACT CCTCGTCACT TTGGCCTTGC 
    GCACCGCCCC CGCCGATCCC CATCCATCCC GCGAGCGACC ACGCCGCCGT 
    CGTTCGTCCT GCCGCTTCCA CCCTGGAAGG AGGTTTAAAA TGGCTCAACC 
    TTCTGTTATC CTAGCAACTG CAAGTTATGA TCACTCAATA AAATTTTGGG 
    TAGCTAAGAG TGGTCGCTGT TACCGCACTC TTCAACATAC GGAATCGCAT 
    ATTAACCGCC TTGAGATAAC CCCAGACAAG CGTTTCTTAG CTGCTGCTGG 
    CAATCCTCAT ATCCGTCTTT TTGACATTAA CTCAAACAGT AACCATCCGG 
    TAATTAGTTA TGACTCACAT ACTAGTAATG TGATGGCTGT GGGATTCCAT 
    TGTGATGGCA ACTGGATGTA TTCAGGTTCT GAGGATGGTA CTGTGAGAAT 
    CTGGGATTTG CGCACTGCCA CTTGTCAACG AGAATATGAA AGTCGTGCTG 
    CTGTGAACAC TGTGGTTCTG CACCCAAATC AGAAAGAGCT AATATCTGGT 
    GATCAGAACG GAAACATACG TGTGTGGGAT TTGGCTGCTA ACTCGTGCAG 
    CTGTGAGCTG GTGCCAGAGG TTGATACTGC TGTAAGATCC CTGACAGTCA 
    TGTGGGATGG GAGTATGGTG GTTGCTGCAA ATAACCGTGG GACATGTTAC 
    GTCTGGCGCT TGCTTAAGGG TACTCAGACA ATTACCTGCT TTGAACCCCT 
    CCATAAATTG CAAGCACATG ATGGTTACAT TCTGAAGTGC CTGCTTTCCC 
    CAGAGTTCTG TGACCCCAAC AGGTACCTTG CAACAGCCTC ATCTGACCAC 
    ACTGTGAAGA TTTGGAATGT TGATGGCTTC AAATTGGAAA AAACTTTAGT 
    AGGTCACCAG CGTTGGGTTT GGGACTGCGT ATTCTCAGTA GATGGTGCTT 
    ATTTGATAAC TGCTTCCTCT GACACTACGG CGAGATTGTG GACGATGTCA 
    ACCGGAGAGG CAATCAGGGT TTACACGTCG CATCACAAAC CAGTTGTCTG 
    CTGTGCTCTT CATGACGGAG CTGAATCAGC ACCATCATAA GCAGCCCCGT 
    GCCTCAGGCA TTTTGTACAT ACTCCAGTTT GAAAACATGT GAAGCTCTGA 
    AAAATTTCAG CACTCTTAGG ACCTTGAGGC CAAAGCAGCT GGCTTCATGT 
    TGCTGTAGCA CCTGATTGAC AAATAATGTG CATGCGCAAG GTGGACAATT 
    GATATGATTT ATTAAGCGTC TCGGTTTTTA ACAAAGTGCT CTTCTATTCC 
    TG

    Gene models with high sequence identity

    1. AT3G18140.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-150; Score: 530.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan G-protein beta WD-40 repeat, region 0.000000025
    FPrintScan G-protein beta WD-40 repeat, region 0.000000025
    FPrintScan G-protein beta WD-40 repeat, region 0.000000025
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 1.3e-68
    Gene3D WD40/YVTN repeat-like-containing domain 5.5e-66
    HMMPanther G BETA-LIKE PROTEIN GBL 2.1e-177
    HMMPfam WD40 repeat, subgroup 0.0038
    HMMPfam WD40 repeat, subgroup 1.3
    HMMPfam WD40 repeat, subgroup 0.0000000014
    HMMPfam WD40 repeat, subgroup 0.00058
    HMMPfam WD40 repeat, subgroup 0.0000000053
    HMMPfam WD40 repeat, subgroup 0.000000018
    ProfileScan WD40 repeat 2 16.29
    ProfileScan WD40 repeat 2 10.575
    ProfileScan WD40 repeat 2 10.909
    ProfileScan WD40 repeat 2 13.483
    ProfileScan WD40-repeat-containing domain 42.896
    HMMSmart WD40 repeat 34
    HMMSmart WD40 repeat 0.61
    HMMSmart WD40 repeat 0.0000000011
    HMMSmart WD40 repeat 0.000026
    HMMSmart WD40 repeat 16
    HMMSmart WD40 repeat 0.00002
    HMMSmart WD40 repeat 0.00000014

    See the detailed result >

    AT3G18140.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G22040.1); Has 76534 Blast hits to 29814 proteins in 808 species: Archae - 88; Bacteria - 10199; Metazoa - 30987; Fungi - 16399; Plants - 9158; Viruses - 0; Other Eukaryotes - 9703 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR