K33811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33811

Determination of introduced cDNA(s)

  • J013164F22 - Rice Full-length cDNAs - Original: J013164F22

    full reading [+] show sequence

    Nucleotide sequence: J013164F22 - full reading
    GTGAGACCAA CTACCAATCA ACCAACTAAC CGAACAGCGC GCGCAAGAGA 
    TGAAGCGGAA AGCTAGCAGC AGCAGCAGCC CAGATTGCCC ACGACTCAAA
    CTCCCAATCC CCAACCAATC GCCTATAATC CTTAGTATAG TTAGTTTATT
    CCAACCCGAA TTCCAACCTC CCAAGAATTC AATCTCTTGT TCCGTTTCGC
    TTCTTTTAAT TCAAGATTGA ATCAATTACA TAGCGTGTTT GCTTGTCGTT
    GATGCTTTGC TTCCTGGAGG AGGAAACGCC CGCACACGCC GCCGACCACC
    TCTCCGTTTC CTTGGATCTT TCAGCTTCCT GTTCCTCACG AGATCGAGAA
    GGGGGGAAAA AGAAAACGTC GGTTTTTAGT CTCGTTTGCC TCGATCCTCT
    CGTTCTTGGT TGGTCGGCGC CATGAGTAAC ACCCTGCTTC GAATCTACCC
    TTCCGAGCTG AAGATACCCT TCGAGCTCAA GAGGCAGAAT TCGGGGATCC
    TGGAGCTCAC GAATAAGACC GATCATCATG TAGCCTTCAA GGTGAAAACG
    ACGAACCCTA GGAAGTACTC GGTGAGACCA ACCACCGGAA TCGTTCTGCC
    CAGAGGGTCT TGCGGAATCA CAAGTTCGTC TTGCTTCCTC TGCTGCTGTA
    CATTGCCCAA CTGATCAGTT CATCGTGTTT ATAAACGCAT TGCTGTTCTT
    GCTCTGAAAA ATCGTTGCAG TATCTATGCA ACCGCCGAAA GAGATCCCTA
    CGGATTATAA CTGCAAGGAC AAGTTTCTCA TCCAAAGCGT CGTGGTAGAG
    GATGGCACAA CGCAGAAGGA CATTCACAGT GACATGTTCA GTAAAGAGGC
    AGGCAAGGTG GTCGAGGAGT TCAAGCTGAG GGTGGTCTAC ATCCCTGCCA
    ATCCTCCCTC CCCTGTGCCA GAGGAAGAAG AGGATGAGAT TGATTCCCTT
    GATTCAGATG TGGACCATGA AGTGCAAATG CCATCTACGT TCGATGCTGC
    ATCAAGGAAG GGATATACAT CTGGATCGCA AGCTTCACAT GACGAGGGCG
    TCTCTTTGAC CAAAGCTGTA TTGAGTAAAT ATGTAGATGA AAACCAGAAG
    CTTCAACAAG AACTGGTATG GATTTTCTTT AGATAAGAAT TTGGAGAAAA
    TTGATACTTT CAATGTTTTA AAAAAGAACT GACCGTTTAA TTCGCTTCAA
    CTTCTCCATA ATTGAATAAT TGAGTGATTC GTATGAAATT ATTTTTTCTT
    GCTACCTTTA ATGAGGTTCA TATCATGATA TTTGTTACGA GACATTGCTC
    CCTTTCGATA GTTCTTTTTT ACTTAACCTT TTTTGCATAC AACATATCGT
    AAATTTACAA CATCTGCGTG CAAAAGCACC AGATCCACCA AAAGAAAAGA
    GAAGCAAGAC TAGGGCAGAT CAATTACTTA ACCCCAAGTT GATCTATTGC
    AGGATCTTCT TAAGAAGAAA AGGTCATCAT CCGATGGGGG TTTCACAGCT
    CTGTTTGTGC CTTTTGTCTT TGCGTTCTTC GTCTTCATTG GATACTTAAT
    GGCGGGAAGC AATGTTTAGC CAGAATAGCT GCAAAACATA CGCATCGTTT
    TGCAGAATTT TGTCCCTCTG GCTGATCAAT TCTTTCTGTT TCTCTTGGTA
    GAAATATATT TCTTCATTAT AGGTGGTTGT CTTCCGTTCT TGTGAAGTAT
    AATATACCTC TTAAAGAATG GGAGAGAACC ATTCATTGTA GATAGACAAA
    TAGGCGTTCT ATCTCTGAAT TGTTCATATA TAATAAACCT CTGGTTCATT
    ATACACACAC GTTTGCTTGT

    Gene models with high sequence identity

    1. AT4G00170.1 [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
      E-value: 1e-38; Score: 84.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Major sperm protein 18.166
    ProfileScan Major sperm protein 10.647
    superfamily PapD-like 7e-18
    superfamily PapD-like 5.3e-09
    HMMPfam Major sperm protein 2.5e-18
    HMMPanther VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) 3e-13
    HMMPanther VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) 4.6e-13
    Gene3D PapD-like 4.9e-10

    See the detailed result >

    AT4G00170.1

    Model type
    Protein coding
    Short Description
    Plant VAMP (vesicle-associated membrane protein) family protein
    Computational Description
    Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR