K33821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33821

Determination of introduced cDNA(s)

  • J033074I02 - Rice Full-length cDNAs - Original: J033074I02

    full reading [+] show sequence

    Nucleotide sequence: J033074I02 - full reading 
    GTCAGGCCAA AACACTGCAA CATTTCAGAC TTCACAGTTC ACAGTGAGTT 
    CAGACCAAGA ACACAAGAAT ACCAAAAAGA ACAGCACCAA GAACTCTCCT 
    CCAATCCATC ACAGACATTT TTCTTCCCTC CAAGAGAGGC ATTGATCATC 
    AGAGAGTAGA GCCAGGGCGT GTGTGTGTGT GATGAGCTCA GTGCTGCTGT 
    TCTTGCTTCT GCTGCTGCTT TCTGGAGTGA GCTTGAGTGG CTGCATAAGG 
    CTTGGCAATG GCGGGTATGA GGAGTGGAGG ATGGGCTCGG CGACCTACAT 
    CAAGGAGTCC CTGGGGCACC CGCTGAATGA TGGTGGTGGA GCCTGTGGGT 
    ACGGCGACCT GGACATCTTC AGGTACGGGA GGTACACCGC CGGCGTGAGC 
    GGCGCGCTGT TCGGGCGCGG CAGCGCGTGC GGCGGCTGCT ACGAGGTGCG 
    GTGCGTGAAC CACGTGCTGT GGTGCCTCCG CGGCAGCCCG ACGGTGGTGG 
    TGACGGCCAC CGACTTCTGC GCGCCCAACC TCGGACTCTC CGACGACTAC 
    GGCGGCTGGT GCAACTTCCC CAAGGAGCAC TTCGAGATGT CGGAGGCCGC 
    GTTCCTCCGC GTCGCCAAGG CCAAGGCCGA CATTGTGCCG GTGCAGTTCC 
    GGAGGGTGAG CTGTGACAGG GCAGGGGGGA TGAGGTTCAC CATCACCGGC 
    GGCGCCAGCT TCCTGCAGGT GCTGATCACG AACGTGGCGG CGGACGGGGA 
    GGTGGCGGCG GTGAAGGTGA AAGGGTCGAG GACCGGGTGG ATCCCGATGG 
    GGAGGAACTG GGGCCAGAAC TGGCAGTGCG ACGCCGACCT CCGCGGCCAG 
    CCGCTGTCGT TCGAGGTCAC CGGCGGGAGG GGCCGCACGG TCGTCGCCTA 
    CAGCGTCGCG CCGCCGGACT GGATGTTCGC GCAGACCTTC GAAGGCAAGC 
    AGTTCGTCGA GTAGGTGTCG ACGATGTGGG TGTCATTCTT GGAATGATTG 
    TAATTATTAT GGTTATAATT ATATTATACA GGTGAAAAAC AACTGTTTTG 
    GTTTGGTTTT GGTTTGGATG TTGTTGTTTG ATCTGCTCAG CATGGCAAAC 
    GAAATTATTA TAGAGTTAAT CAGTTAATGA AGGATTGACA AAAAAAATGT 
    TTGGCT

    Gene models with high sequence identity

    1. AT4G38210.1 [+] show detail - expansin A20
      E-value: 1e-83; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Expansin 45, endoglucanase-like 26.505
    ProfileScan Pollen allergen/expansin, C-terminal 20.445
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin 1.6e-48
    FPrintScan Expansin/Lol pI 3.6e-28
    FPrintScan Expansin/Lol pI 3.6e-28
    FPrintScan Expansin/Lol pI 3.6e-28
    FPrintScan Expansin/Lol pI 3.6e-28
    FPrintScan Expansin/Lol pI 3.6e-28
    HMMPfam Pollen allergen/expansin, C-terminal 1e-24
    HMMPfam Rare lipoprotein A 3.3e-18
    superfamily Barwin-related endoglucanase 6.7e-34
    superfamily Pollen allergen/expansin, C-terminal 2.6e-31
    HMMSmart no description 1.6e-40
    Gene3D Pollen allergen, N-terminal 2.5e-30
    Gene3D Pollen allergen/expansin, C-terminal 0.000000000042

    See the detailed result >

    AT4G38210.1

    Model type
    Protein coding
    Short Description
    expansin A20
    Curator Summary
    expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
    Computational Description
    expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR