K33825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33825

Determination of introduced cDNA(s)

  • J013049M07 - Rice Full-length cDNAs - Original: J013049M07

    full reading [+] show sequence

    Nucleotide sequence: J013049M07 - full reading 
    GTGGAGCAAA TCGTGGCCGA TCTTGTGTTC TAGTGAGTTG CTGCAGCCAT 
    GAACAATCTC TTCTCTAGCT CGTGGAAGCG CACCGGCGGC GGCGGCGGCG 
    GCGACGGGGA TATTGAATCG GGCGGCGGCG TGGAGATGGC GCCGCCGCCG 
    GGGGCGGCGG CGGGGGCGAG CCTTGATAGG TTCTTCGAGG ACGTGGAGTC 
    GATCAAGGAC GAGCTCCGCG ACCTGGAGCG GATCCAGCGG TCGCTCCACG 
    ACGCCAACGA GGGGGGCAAG TCGCTGCACG ACGCGGCGGC GGTGCGCGCG 
    CTGCGGGCGC GCATGGACGC CGACGTCGCC GCCGCCATCA AGAAGGCCAA 
    GGTGGTGAAG CTCCGCCTCG AGTCGCTCGA CCGCGCCAAC GCCGCCAACC 
    GCTCCGTCCC CGGGTGCGGC CCGGGCTCCT CCACCGACCG CACCCGCACC 
    TCCGTCGTCG CCGGCCTCCG CAAGAAGCTC CGCGACTCCA TGGAATCCTT 
    CTCCTCCCTC CGCGCCCGCA TCTCCTCCGA GTACCGGGAG ACCGTGGCGC 
    GGCGGTACTA CACCGTCACC GGCGAGCAGC CCGACGAGGC GACGCTCGAC 
    AACCTCGCCG AGACCGGGGA AGGGGAGCGG TTCCTGCAGC GCGCGATCGC 
    CGAGCAGGGC CGCGGCGAGG TGCTCGGCGT GGTCGCCGAG ATCCAGGAGC 
    GGCACGGCGC CGTGGCGGAG CTGGAACGCT CGCTGCTCGA GCTCCACCAG 
    GTGTTCAACG ACATGGCCGT GCTGGTGGCG GCGCAGGGGG AGCAGCTCGA 
    CGACATCGAG ACCCATGTCG GCCGCGCGCG CTCCTTCGTC GACCGCGGCC 
    GCGAGCAGCT GGTGGTGGCG CGGAAGCATC AGAAGAGCAC CCGCAAGTGG 
    ACCTGCATCG CCATCATCAT CCTGCTCGTC CTCATCCTCG TCGTCGTCCT 
    CCCCATCGTG CTCAAGTTCG TCAACAACAA CAAGAGCAGC AGCAGCTCGC 
    CGGCGCCGGC GACGCCGTCG CCGCCGCCGC CAACGGCATG ATGGTCGTAT 
    GATAGTCCAT GTTGAGTTCA TACTTCATAG TGAGAGATTT CTATTTTTTT 
    GTCGGGTTTT TTCTTTCGTG ATTGTAATTA CTTCTGTATG ATTAGTTGAT 
    CGTCTTGATT ATTATACATA TCTGATTCTT CTAAATATCA TTGCATTTGA 
    AACTGC

    Gene models with high sequence identity

    1. AT3G11820.2 [+] show detail - syntaxin of plants 121
      E-value: 4e-87; Score: 318.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SYNTAXIN, ARABIDOPSIS THALIANA 5.3e-97
    HMMPanther SYNTAXIN 5.3e-97
    ProfileScan Target SNARE coiled-coil domain 15.431
    PatternScan Syntaxin/epimorphin, conserved site 0
    Gene3D no description 2e-46
    superfamily t-SNARE 2.1e-45
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Target SNARE coiled-coil domain 3e-20
    HMMPfam Syntaxin, N-terminal 1.8e-09
    HMMSmart Syntaxin, N-terminal 2.8e-32
    HMMSmart Target SNARE coiled-coil domain 6.9e-17

    See the detailed result >

    AT3G11820.2

    Model type
    Protein coding
    Short Description
    syntaxin of plants 121
    Curator Summary
    Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
    Computational Description
    syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 122 (TAIR:AT3G52400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR