K33831

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33831

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33831

Determination of introduced cDNA(s)

  • J013031J19 - Rice Full-length cDNAs - Original: J013031J19

    full reading [+] show sequence

    Nucleotide sequence: J013031J19 - full reading 
    GAGGTTGGCA TCAACGACCC GGCGTGCTGC AGCGACGAGA TCGAGACACT 
    GGAGCGGGAG ATCGGCGACC GCGTGGCGGG GAGGTGGACG TCGGCCATGA 
    TTGCGCTCGT TGGGCTCCTC CGGTACGCCA AGTGCGTCCT CTTCACCGCG 
    GCCACGCCGC GGCCGATGGA CACCAAGGTG GATGTTGACG ACGATGACGA 
    TGACGACGAC GCCGAGCCGC CGTCGCCGCC GCCGGACTTC CGGTGCCCCA 
    TCTCTCTCGA TCTGATGCGC GACCCGGTTG TGTCGGCGAG CGGCCAGACG 
    TACGACCGGG AGTCCATCAC CCGGTGGTTC GGCTCCGGCA AGTCGACGTG 
    CCCCAAGACT GGGCAGGTGC TGGCCAATCT GGAGCTTGTC CCCAACAAGG 
    CGCTCAAGAA CTTGATCTCG CGGTGGTGCC GGGAGAACGG CGTCGCCATG 
    GAGAGCTCCG AGCCAAGCAA GCCCGAGCCA GCGCCGGTGG TGACCGCGAA 
    CAAGGCGGCG TTGGAGGCGG CGCGCATGAC GGCGTCGTTC CTCGTCAAGA 
    AGCTCTCCGT CTCCTTCTCC CCCGCCGCGG CCAACCGCGT GGTGCACGAG 
    ATCCGGCAGC TCGCCAGGTC CGGCAACGAC ACGCGCGCCT TCATCGGGGA 
    GGCCGGCGCC GTCCCGCTCC TCGTGCCGCT GCTCCACTCC GACGACACCG 
    CCACCCAGCT CAACGCCGTC ACGGCGCTGC TCAACCTGTC CATCCTCGAC 
    GCCAACAAGA AGCGCATCAT GCACGCCGAG GGCGCCGTCG AGGCGATCTG 
    CCACGCCATG GGCTCCGGCG CGACGAGGCG CGCCAAGGAG AACGCGGCGG 
    CCACCGTGCT CAGCCTGGCG TCCGTCCATT CCTACCGCCG CCGGCTTGGC 
    CGGAACCCAC GCGTCGTCGA GAGGGTCGTG CACCTCGTGC GCACCGGCCC 
    CTCCAGCACC AAGAAGGACG CGATCGCCGC GCTCCTGTGC CTGTCCGGCG 
    AGAGGGAGAA CGTCGGGAAG CTCGTGGAAG CCGGCGCCGC GGAGGCGGCG 
    CTGTCGGCGA TCAGCGAGGA GGAGACCGCC GTGGCGGTGC TGGCGTCGCC 
    GCCGCCGCCG TCGTCGTCTT CTTCGTATTC CTCGTCGGCG TCCGACGGGG 
    AGATCCTCCG ATCGCTGCAC CGCCTGGCGA GGGATCTGGC TGCGGCGCGG 
    TGGTGCGCCT CGTGGCCGAG CTGCGGCGCG GCACGGAGTG GTCAAGGGAG 
    TGCGCGGCCG CCGCGCTGGT GCTGCTCTGC CGCCGCGTGG GCGCCGCCGT 
    GGTGGCGCAG GTGATGTCGG TCTCCGGCGT GGAGTGGGCG ATATGGGAGC 
    TGATGGCCAC CGGCACGGAG CGCGCGCGGC GCAAGGCCGC GTCGCTCGGC 
    AGGGCATGCC GGCGTTGGGC CGCGGCGGAG CAAACCGCGG AGTACCCCGC 
    CACCTCCGAC GTCACGACGA CGGCCATTAC AGCGTCGTGA AATTCCACCA 
    CGGCCACATT GATTAATTCA TAGGAGCAGA TAAAATTTCG ATTTTTTTTC 
    CCACGCACAA CGAATGCTTG TACAAAAAAA AAAATTGTTT CTTGCCTTCA 
    AGGCCTTCAC GATTCTTTGG TTCATGGGAC CAGTTTGAGT AATTGATAAA 
    CTGCACATAC AATTATACG

    Gene models with high sequence identity

    1. AT5G01830.1 [+] show detail - ARM repeat superfamily protein
      E-value: 7e-81; Score: 298.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Armadillo 12.652
    Gene3D no description 3.4e-26
    Gene3D Armadillo-like helical 2.2e-17
    HMMSmart U box domain 5.6e-31
    HMMSmart Armadillo 0.0071
    HMMSmart Armadillo 500
    HMMPanther WDSAM1 PROTEIN 1.2e-12
    superfamily Armadillo-type fold 8e-34
    superfamily RING/U-box 2.8e-13
    HMMPfam U box domain 1.8e-20
    HMMPfam Armadillo 5.7e-10

    See the detailed result >

    AT5G01830.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR