K33835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33835

Determination of introduced cDNA(s)

  • J033112M16 - Rice Full-length cDNAs - Original: J033112M16

    full reading [+] show sequence

    Nucleotide sequence: J033112M16 - full reading
    GGGCAGGAAC ACACCACCAT CTGCATAATA CTTCCTTCTC AAATCCCAAC 
    CAACAGTTGC AGTAGAGTCA CTAGCCGCCC ACTGCAACTG AAATGGCGCC
    GGCGAGCGTG AAGGTTTTCG GGTCACCCAC CTCGGCGGAG GTTGCCCGCG
    TGCTCACGTG CCTCTTCGAG AAGGACGTCG AGTTCCAGCT CGTCCGTGTC
    GACGCGTACC GCGGCACGCA GCGCATGCCC CAATATCTCA AGCTTCAGCC
    GCTCGGCGAG GCGCTCACGT TCGAAGATGA CAACCTCACC CTGTCCGAGT
    CGAGGGGGAT CCTTCGCCAC ATAGCGCACA AGTACGCGAG GCAGGGAAAC
    CCGGACCTGA TCGGCACGGG CGCGCTGGAG CGCGCGTCCA TCGAGCAGTG
    GCTGCAGACG GAGGCGCAGA GCTTCGACGT GCCCAGCGCC GAGATGGTCT
    ACAGCCTCGC CTTCCTGCCG CCCAACATGC CCAAGCAGAA CGACAACGGG
    AACGGGAACG GCAACGGCTA CGGCAACAGC AATGGCAGGG AGGTCCAGGT
    GGCGAACGCG TCGAGCAAGC GCGTGGTGGC CGGCGCGACG GACGGGAAGA
    CGGCGGCGAG CGGCGCCAAC GGCAACAAGC AGCAGCAGAA GGAGGAGGAG
    ATGCGGAAGG TGTTCGAGAA GAGCAAGAAG GACCTGGAGA AGCTGCTGGA
    CATCTACGAG CAGCGGCTGG AGGAGGCGGC GTACCTGGCC GGCGACAAGT
    TCACCATCGC CGACCTGTCC CACCTCCCCA ACGCCGACCG CCTCGCCTCC
    GACCCGCGCT CCCGCCGCAT GTTCGAGGCG CGCAAGAACG TGAGCAGGTG
    GTGGAACAAC ATCTCCAGCC GCGAGTCGTG GGAGTACGTC AAGAGCCTGC
    AGCGCCCGCC GTCCGCCGCG CACGCCGGCA ACGCCCAGCA GCAGCAGCAG
    CAGCAATCGC CGTCCGCCGG CAACAACTAC CAGCACCAGC AGGGCCAGGG
    CCAGGGCCAG CAGCACTACC GCAACGAGCA AGTCGAGAAC TACAACAACT
    AAACATGGGC ATATCGACGA TCGAGCTGCA TGAGTTCCAA GGGGTTGTCA
    CGTATGCTTC CTACTGTTAC TTTACTTGCG CCTTTGCCAT TTGCGCGCCG
    TGTCGATTAA TTTGTCGCAG ATTGTCTGGC CCGGCCTCCA GTACGTCGTC
    ACTACGTGTT TTGTTCGGCA TCGTGGTTTT TCTACCGTTG TAACAGTCGC
    AGTTTACCTA TCGTCCTTGT AATAAAATGT TGGCCAGCCC CTTTCATACG

    Gene models with high sequence identity

    1. AT2G30870.1 [+] show detail - glutathione S-transferase PHI 10
      E-value: 5e-29; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutathione S-transferase, N-terminal 14.959
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 16.654
    superfamily Glutathione S-transferase, C-terminal-like 9.1e-27
    superfamily Thioredoxin-like fold 1.7e-16
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Glutathione S-transferase, C-terminal 0.0000000000012
    HMMPfam Glutathione S-transferase, N-terminal 0.0000000055
    Gene3D Thioredoxin fold 0.0000000000000081
    Gene3D Glutathione S-transferase, C-terminal-like 2.2e-20
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 8.1e-54
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 8.1e-54

    See the detailed result >

    AT2G30870.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase PHI 10
    Curator Summary
    early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002)
    Computational Description
    glutathione S-transferase PHI 10 (GSTF10); FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: response to cadmium ion, response to water deprivation, toxin catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase PHI 9 (TAIR:AT2G30860.1); Has 19000 Blast hits to 18970 proteins in 1605 species: Archae - 0; Bacteria - 10344; Metazoa - 2591; Fungi - 970; Plants - 1495; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR