K33844

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33844

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33844

Determination of introduced cDNA(s)

J013079H24 - Rice Full-length cDNAs - Original: J013079H24

full reading [+] show sequence

GCCAGATACG GAACTACTCC CCTATCCAAC ACCTCCGAGT CCGAGCAACG 
CAAGATGGCG TCGTGGTCGT CGCCCGTCGC CGCCGCCGCC TTGCAGGTCC 
ATTTCGGGTC CTCCTGCTTC TTCTCCGCCC GATCGCCACG ACAGACCCTC 
CTCCTACCAC CTCTCGCCCG CAACCCTACA CTGACCATCC AGCCCCGGCC 
CCATCCCTTC CGGAACATCA ACTCCTCCTC CTCCTCCAGC TGGATGTGCC 
ACGCCGTCGC CGCCGAGGTC GAGGGCCTCA ACATCGCCGA CGACGTCACC 
CAGCTCATCG GCAAGACTCC AATGGTATAT CTCAACAACA TCGTCAAGGG 
ATGTGTTGCC AATGTCGCTG CTAAGCTCGA GATTATGGAG CCCTGTTGCA 
GTGTCAAGGA CAGGATAGGA TACAGTATGA TTTCTGATGC GGAAGAGAAA 
GGCTTGATAA CTCCTGGAAA GAGTGTTTTG GTGGAACCAA CAAGTGGAAA 
TACAGGCATT GGTCTTGCCT TCATTGCTGC TTCCAGAGGA TATAAATTAA 
TATTGACCAT GCCTGCATCA ATGAGCATGG AGAGAAGAGT TCTACTCAAA 
GCTTTTGGCG CTGAACTTGT CCTTACTGAT GCCGCAAAAG GGATGAAGGG 
GGCTGTAGAT AAGGCTACAG AGATTTTAAA TAAGACACCT GATGCCTATA 
TGCTGCAGCA GTTTGACAAC CCTGCCAACC CAAAGGTACA TTATGAGACT 
ACTGGGCCAG AAATCTGGGA GGATTCTAAA GGGAAGGTGG ATGTATTCAT 
TGGTGGAATT GGAACAGGTG GAACAATATC TGGTGCTGGC CGTTTCCTGA 
AAGAGAAAAA TCCTGGAATT AAGGTTATTG GTATTGAGCC TTCTGAGAGT 
AACATACTCT CTGGTGGAAA ACCTGGCCCA CATAAGATTC AAGGCATTGG 
GGCAGGATTT GTTCCAAGGA ACTTGGATAG TGAAGTTCTC GATGAAGTGA 
TTGAGATATC TAGTGATGAG GCTGTTGAGA CAGCAAAGCA ATTGGCTCTT 
CAGGAAGGAT TACTGGTTGG AATTTCATCT GGGGCAGCAG CAGCAGCTGC 
CATTAAAGTT GCAAAAAGAC CAGAAAATGC TGGAAAGTTG GTAGTGGTTG 
TGTTTCCAAG CTTTGGTGAG AGGTACCTTT CATCTATCCT TTTTCAGTCG 
ATAAGAGAAG AATGTGAGAA GTTGCAACCT GAACCATGAG CCTAACTTCA 
GTGTTCACAA CATCATAATT GTTTCTGAGA TTTCTGGCCA TTAGTTTTTT 
TTTCTGAGAA GTATCATACC ACTCCATAGC TGTTTGTTCG ATAAATAAAA 
CAGTTACCTT TGCACTTATA ATGAGGCTTG TGAGGGTACT GTGAAATTTC 
TCTGAACATC TTCTACTCTT CTCTTTTATC CTTAAATCAA TCTGGGAGCA 
GTTTGTAATA CATACGTAAA TTTAAAGCTG GGTGTTTGGT AATTGTAAAC 
AAATGTTTCG AAGAGCCGTG AAACATTATC AATTAGCATG AAGCACTTTA 
AAAGTGCTTT CC

Gene models with high sequence identity

AT3G59760.3 [+] show detail - O-acetylserine (thiol) lyase isoform C
E-value: 8e-140; Score: 494.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Cysteine synthase K/M	9e-206
HMMTigr	Cysteine synthase A	2.5e-210
PatternScan	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	0
HMMPanther	CYSTEINE SYNTHASE	4e-148
HMMPanther	SER/THR DEHYDRATASE, TRP SYNTHASE	4e-148
HMMPfam	Pyridoxal phosphate-dependent enzyme, beta subunit	1.3e-59
Gene3D	no description	2.6e-67
superfamily	Pyridoxal phosphate-dependent enzyme, beta subunit	3.2e-93

See the detailed result >

AT3G59760.3

Model type: Protein coding
Short Description: O-acetylserine (thiol) lyase isoform C
Curator Summary: Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC
Computational Description: O-acetylserine (thiol) lyase isoform C (OASC); FUNCTIONS IN: protein binding, cysteine synthase activity, zinc ion binding, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase B (TAIR:AT2G43750.2); Has 22643 Blast hits to 22626 proteins in 2678 species: Archae - 432; Bacteria - 15847; Metazoa - 414; Fungi - 670; Plants - 570; Viruses - 2; Other Eukaryotes - 4708 (source: NCBI BLink).
Link: InterPro Scan - TAIR