K33910

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33910

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33910

Determination of introduced cDNA(s)

  • J033082D03 - Rice Full-length cDNAs - Original: J033082D03

    full reading [+] show sequence

    Nucleotide sequence: J033082D03 - full reading 
    GGCGCGAACT CCGCCGTCTC CCTCCCTCCT CAACCTGCAC GCAACCCCTC 
    CGCCGCCGCC CTTCTCCCCT CGTCCCCCCG TGCGCCGCCG CCGCCGACCG 
    CTGCAACCAG ATCGGCCGAC GCGTCCTCCT CCTTCCGCCG CCCCACTCTC 
    CACCAACCTC ACCGCCGATT CCTCACCCAA TCCTCCATTC CTGACCTAGG 
    GAGAAGCTTC CTCTTCCTCT TCTCTTCCCC CGCCTGTTCC TTCCCTTGTT 
    GGTTCGGATG GCGACCGTCA GCGACGACTA CGCGCAGATC GACATCTCCA 
    CGGAGGAGAA GGACAAGCTT GTAGCGGAGG TGATGCGCCA CGTGCTCTTC 
    AAGACGCACC AGACCGCCGG CTGCCCCATC AAGCGGGAGG AGCTCACGCA 
    GATCGTTACC AAGAACTACC GCCAGCGCGT GCTCCCGGCA CTCGTCATCA 
    AGGAGGCCGG GGACAGGCTC GCCGCCACAT TTGGCTACGA GATGAGGGAG 
    CTCCAGAGGA CACGCGCCCC GTCCACCCGC TCTGGCCGCC CGTCCCAGCA 
    GCAGGTTAAT GTGGATGCGA AGAGCTACGT CCTGGTCAGT AAGTTAGACC 
    CTGAGGTGTA CAGCAAGTAC GTCGAGCATA AGGAGGCTGC CCATGTGTCT 
    GGCTTCGCTT TTGTTGTCAT TAGCATTGTT CATCTGTCCG GTGGAAAAAT 
    TTCTGAAGAG GATCTCTGGC ATCAATTGAG ACGGCTGGGT TTAAATGAGA 
    GCGATGAAAA CCACCCTGTT CTTGGTAACA ACAAGCAGGC ACTTGAACTC 
    CTTGTGCAGC AAAGGTACCT ACTGAAGGAG AAGCTTAGTG GGCCAGAAGG 
    CCATTCTATG ATGTATGAGC TTGCAGAGAG AGCATTGGAT GAGTCCATCA 
    GTGGGAAGCT TAAGGATTAC ATTTCGCAGG TTGTGAGCAC AAGCACTGCT 
    GCAGAAGTAG ATTGAAGTGG ATATGATGAG CAAGAGATAC ATCTGGCTGG 
    TAGGTTTGTC TAAGTCAGTG TATTGGCAAG ACTAACCAGG CGAAAGAAGC 
    TATATATCTT CTTGCGTGGG CATGATGAGA CTTCTACTGA CATGCAAAAA 
    CTAGTAGAGG CTTATTTTGT TTAAAGGGCT GTATAGGAGA GGAGATGGTG 
    GACCTCTGAA CTAGCTATAT AATTTAGGCC ATACAAAAAC TGGCGTCCTT 
    AACTATGTAT CTGCTACAAA TATTCTATAA CTTAAGCGTT ATTATATCAT 
    CATCATGCTT GAAATGTTGC CGTTCAGGTC TCCTGACCTG ATGTGAGGAA 
    GCC

    Gene models with high sequence identity

    1. AT1G34770.1 [+] show detail - CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 protei...
      E-value: 4e-73; Score: 272.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MAGE-RELATED 6e-64
    HMMPanther MAGE protein 6e-64
    HMMPfam MAGE protein 1.3e-44
    ProfileScan MAGE protein 17.639

    See the detailed result >

    AT1G34770.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR