K33931

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33931

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33931

Determination of introduced cDNA(s)

  • J023119N23 - Rice Full-length cDNAs - Original: J023119N23

    full reading [+] show sequence

    Nucleotide sequence: J023119N23 - full reading 
    GGCCTTACAC ATCGCACCAC TCTCTCTTAC TCGTCCATAC GCCGAGTCCA 
    CGAGATCTCG CCGTAGTCCA TACACCGGTT GATCGGAGGT CGTGTTGCCG 
    CCGACGGTGG CCATGATGAT GATGGGGGAA GGAGTCAGCA GCGTCCCGCC 
    GTGGTCTCAC CTCCCCGTGA GCGGAGTCGA TGTACTCGGC GGCGGTGGTG 
    GCGGTGGGGA TGAGATGACG CCGTACGTGA TCGCCGCGCT GCGGGATTAC 
    CTGCCGGCGA ATGATGTCGG GGTGGGGGCT GACGAGGAGG AGGAGGCCGC 
    GGCGATGGCC GCGGCGGTGG ACGCGTACGC GTGCGACGAG TTCCGGATGT 
    ACGAGTTCAA GGTGCGGCGG TGCGCGCGCG GGCGGAGCCA TGACTGGACC 
    GAGTGCCCCT TCGCGCACCC GGGGGAGAAG GCGCGCCGCC GCGATCCGCG 
    CAAGTACCAC TACTCCGGCA CCGCGTGCCC GGACTTCCGC AAGGGCGGGT 
    GCAAGCGCGG CGACGCCTGC GAGTACGCCC ACGGCGTGTT TGAGTGTTGG 
    CTCCACCCGG CGCGCTACCG CACCCAGCCG TGCAAGGACG GCACCGCCTG 
    CCGCCGCCGC GTCTGCTTCT TCGCCCACAC CCCGGACCAG CTCCGCGTCC 
    TCCCGGCGCA GCAGTCCAGC CCCAGGAGCG TGGCGTCCTC GCCGCTGGCC 
    GAGTCCTACG ACGGCTCGCC GCTGCGCCGC CAGGCGTTCG AGAGCTACCT 
    CACCAAGACC ATCATGTCCT CGTCCCCGAC CAGCACCCTC ATGTCTCCGC 
    CCAAGTCGCC CCCGTCGGAG TCCCCGCCAT TGTCGCCCGA CGGTGCCGCG 
    GCCATCCGTC GCGGATCTTG GCCCGGCGTC GGCTCGCCGG TGAACGACGT 
    CCTGGCCTCG TTCCGCCAGC TCCGCCTCAA CAAGGTGAAG TCGTCGCCGT 
    CCGGCGGGTG GAGCTACCCT TCGTCGTCCG CCGTCTACGG GTCTCCCAAG 
    GCCGCCACCG GCCTCTACAG CCTCCCCACC ACTCCACTGG CTTCCACGGC 
    AACGGTGACC ACCGCCTCCA GCTTCATGCC CAACCTGGAG CCACTGGACC 
    TCGGGCTCAT CGGCGACGAG GAGCCGGTCC AGAGGGTGGA GTCCGGAAGA 
    GCCCTCCGGG AGAAGGTGTT CGAGCGACTG AGCCGGGATG GTGCCATCTC 
    CGGCGACGCC ACAGCCTTCG CCACCGCCGG TGTTGGCCTC GACGTTGATT 
    GGGTGTCCGA CCTCATCAAC TGAGGCTTCC AAGTCGCTAT TGGAAGCCCC 
    TTTTGTGAGC ATCAAGGATG ATGGCATGGA GGAGGAGAAG GTGGCGGTAA 
    GAAGAAAATG ATGGCACGAC AAAAAAATCC TTCATTTTCT TTTGTGATTT 
    CAAGTCAAGT TTCTACTAAT TCCTGTACAT ATCTATCTCC CATGTGAATA 
    TTCATGGTTG GTGGAGAGGA GGCAAGTATG GAAAGATGGG TGGATTTGTT 
    TTGGGGTTTT GAGGTAGTAG CAAAATTACC CACAAAAAAA TTAGGTGAAA 
    AAAAAAAGAG GAGTAGAAAT GGAGGTGATT CAGTGTCTCC TGTGTGCATA 
    GGGTGTGTGG AGGTGAAGGA AGCACGGAAG GAAGAAGATC ATGGCGGAAG 
    AAGATGGCCG GATTTCGGCC GCCGTCGCGG CGGCGGCCCT GCCTATTTCA 
    GTGATTTCTG GGGGTTTATC CTCTGTTCAT CGTTTGTTGC ATCATCGACT 
    AGCTGATGAA GATCGTCGAT CGATTTCAAT CAAGCCCCCC CTCTTGTTGA 
    TTTCCTATTT TGTTGATGTA ATCTTTGTTT TGTTAAGAAC CCCCAACAGC 
    ATATTTTGTA CCTTAGCTTA AATCTGAAAA TCTTTTGCTG ACTCATCTAC 
    CTATATGTGG TGATGAAGCC CCCCTCAATG TATTGTAATC ACCTGCTTCA 
    AGTAAATGAT CCAATAATAT TATGTTGCTA TATGTTTCAT T

    Gene models with high sequence identity

    1. AT2G19810.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 9e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCCH-type 13.103
    ProfileScan Zinc finger, CCCH-type 6.258
    HMMSmart Zinc finger, CCCH-type 3.4e-05
    HMMSmart Zinc finger, CCCH-type 12
    HMMPfam Zinc finger, CCCH-type 1.6e-05
    superfamily CCCH zinc finger 0.00038
    superfamily CCCH zinc finger 0.016
    HMMPanther UNCHARACTERIZED 2.6e-07

    See the detailed result >

    AT2G19810.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1); Has 721 Blast hits to 690 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 6; Plants - 412; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR