K33934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33934

Determination of introduced cDNA(s)

  • J013048E22 - Rice Full-length cDNAs - Original: J013048E22

    full reading [+] show sequence

    Nucleotide sequence: J013048E22 - full reading 
    CCTCTTCCAT CCTTCGCTCG CTCCGCCGCC GCCGCCGCCG CCTCCTCCTC 
    CTCGGCGCCT CTCCGCCGCC GCCTCAGCCA TGGTGAAGTA CTCGAGGGAG 
    GCGAACAACC CCACCAAGTC CTCCAAGGCC ATGGGCCGGG ACTTGCGTGT 
    GCACTTCAAG AACACCCGTG AGACAGCTTT TGCTATCAGG AAGTTGCCTC 
    TGGGCAAGGC CAAGAGGTAC CTTGAGGATG TGATTGCCCA CAAGCAAGCT 
    ATCCCCTTCC GTAGGTACTG CGGTGGTGTT GGCCGCACTG CTCAAGCTAA 
    GTCACGCCAT TCAAACGGTC AGGGACGCTG GCCTGCCAAG TCTGCTAGAT 
    TCATTCTGGA TCTTCTTAAG AATGCAGAGA GCAATGCTGA GGTGAAAGGT 
    CTGGATGTTG ATACTCTTTA TGTGTCCCAC ATTCAAGTTA ACCAGGCCCA 
    GAAGCAGAGG CGCCGTACCT ACCGTGCTCA TGGACGCATC AACCCTTACA 
    TGTCCTCCCC GTGCCACATT GAGCTTATCC TGTCAGAGAA GGAAGAACCA 
    GTGAAGAAAG AGCCTGAGTC TCAGATCGCA GCCAGGAAGG CCTAGAGAAG 
    GAAGCTTTGC CCCCCTTCTG CCTGTTTGTT AGATCAGATT ATTATATAGC 
    CTGTGGCTTT TGGCTGAGTG AAAATTTTGG CTGGTTGTCC GCTTGTTTGG 
    CCTATCGGAA ATTCGGAATA CTACTAGCTC ATACTTCGTC AAAACCGTTA 
    TCTCTGTGTA CTGAATCTAT TACTATGTTC TCAAAACGCA AATCTTGGGG 
    GTGTTTGGAT TTTCTTTAAC CTGATTCGGT CGTGAACTGA TGGTTTTTCT 
    TGTCGTAAGT ATGCTGTTGC ACCTGGTGTT GAACAACTAA TCTCTGTTTT 
    TGAAATGGTT TTCGC

    Gene models with high sequence identity

    1. AT1G27400.1 [+] show detail - Ribosomal protein L22p/L17e family protein
      E-value: 2e-73; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L22/L17, eukaryotic/archaeal 6.7e-89
    superfamily Ribosomal protein L22/L17 9e-58
    PatternScan Ribosomal protein L22/L17, conserved site 0
    HMMPfam Ribosomal protein L22/L17 3.4e-34
    Gene3D Ribosomal protein L22/L17 1.5e-57
    HMMPanther Ribosomal protein L22/L17, eukaryotic/archaeal 5.6e-114
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER SLC34A 0.00000000019
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 0.00000000019

    See the detailed result >

    AT1G27400.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L22p/L17e family protein
    Computational Description
    Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR