K33935

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33935

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33935

Determination of introduced cDNA(s)

  • J033137E23 - Rice Full-length cDNAs - Original: J033137E23

    full reading [+] show sequence

    Nucleotide sequence: J033137E23 - full reading 
    GTCTGGTTGC CTCCTCCGCA CGCGCAACGG CGCGACCGGC GACTCTCCTC 
    GCCGCCGGTC ACCGGTCGCC TGGCCCGCCT CTCGCGCCCC GCCAGCCACC 
    GCATCGGCGC AGATCGACGG ACGCCGAGAC GCGCAGCCGC AGTCGCGCAG 
    AGGCGCCGAG TGCCTGAGGG CTCAGCCAGC CGCCGACCGC CGCGGCCGCC 
    TGGCCCCCCT GCCCGTCTCG TCTTCTCCAG TCTCCTCCAA TCCTTCGTGG 
    CAGGTCTCCA AACTCCGGCT CCCCGCTGCG GCGCTCCACC TCCGACTCCG 
    ATTGGCGATT GGACAACACT GAAGGCATGT CAACTATTTC CGATCAGAAG 
    AAACGGACCT TAGAAGCCCT TCAACAACGT TATGCTGCTG CAAAAGCTAA 
    GAAACTGCAA GACAAGCCTA GGTGTCAGAC AAGGAATAAA GATAGTGCGC 
    CCAAGCCCAA TCTTGATGCA TCAAGGAAAG GCAAAGCTCC AGATTTCATT 
    CCATCTCGAA CTTCTGCTCC GTTTCCTTCA AAAAAAGGTC TAGCAATCTC 
    CAGTTCTTCT GCTTCCTCAG GTGGAGAAAC CAATCCTGTA TACTCTGAAC 
    TTTCATTTGC TCCACATGAT AATTTGCTCC AAAGAAGCAT TTCGGATTTG 
    GACAGTATGG ATGTTGTGCA CAATGTTGTT TATGACATAA TTCAGAAAGG 
    TGGAGATGCT GGAAAAATTA CCAAGGGAGC CAAAAAGTTA AAGCTGGAAA 
    AAGGGATTCT GCTGGATAAC TATGTTCACA GGGGTCCTAG ATTAGTTGAT 
    GCACAGGCAA AATCTTTGTT AATTCATTCA AAGCGATCAA AAAGGCACAT 
    GTCACTTAAG CAACATAAGA AATGTGGGTC ATTTGATTTA CCTGAGACAC 
    TCCGCAAGTT TGACCTCTAC AAGCCAATGC ATGAGATGTG GAAAGAGTAT 
    ATCACAGAGC TTACCAAAAG CACACCGAAA AAGCAGTTAT CTGAAACCCT 
    CCTCTCAGCA GATCTTCATG GGGCTCTTGT AATAGTGGCA GAATGCAAAT 
    CAGCCTCTTC TTATCAAGGC GTATGCGGCA TCATGATTCG CGATACTGCA 
    GAGACTTTTG GAATCATATC AGATGACAAT CGCTTCCGAG TTGTGCCAAA 
    AGCTGGGTCA GTTTTCATCC TCCAAGCAGA CTGTTGGAAG GTCACGCTGA 
    TCGGTGACAA ACTGTCACCC AGGGAGAAGC TGAAGGAGAA CCAGCGTCAG 
    CAGCGAGTGC AGGCACAGAT CAGATAGAGT TTTTCATCCT TTGTCTGTTG 
    TAATTTTGGT TGTTTTTTCT CCCCCAGAAA CATGTACAGG GTTTAGTTGT 
    TTAGGTGTTG TTACTGAAGT TTAATGGTAA TCTCCCTCCT CACACCTTAA 
    GCAAGTATCA CTTGAAT

    Gene models with high sequence identity

    1. AT2G43190.3 [+] show detail - ribonuclease P family protein
      E-value: 1e-53; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Ribonuclease P/MRP, p29 subunit, eukaryotic 5.1e-135
    HMMPanther RIBONUCLEASE P 2.7e-30
    Coil coiled-coil 0
    superfamily Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal 1.4e-16
    Gene3D Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal 0.000000011
    HMMSmart Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal 0.00000033
    HMMPfam Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal 5.1e-16

    See the detailed result >

    AT2G43190.3

    Model type
    Protein coding
    Short Description
    ribonuclease P family protein
    Computational Description
    ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR