K33936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33936

Determination of introduced cDNA(s)

  • J033094K08 - Rice Full-length cDNAs - Original: J033094K08

    full reading [+] show sequence

    Nucleotide sequence: J033094K08 - full reading
    CCCCTTGACC CCTTCCTCTC GTCGTCGTCG GTGCGGCGCC GCCAGGGAAA 
    ATGGAGTCAT CGAGGCTGCG GAGGCGGCGG CGCTGCCGCG TCCGGTGCCT
    CCTCGCTCCT CCCGTTGCCG CCCGTGCGCA GCAGCTGCAG CGCGTCGCAT
    ATTTCTCCAA ACCCACGCAG ATCTCCGCTT TTTCCCGGCG GCAACCACGC
    CGCGGCAAGC AGTTCTAGTT ATAAGCCTGT GCAGAATATG CAGAAGAAAG
    AAGTACAAGA TACACGACGC AGGAGATTTG CAGCAGGAAA ACATGTTCTC
    TGTCTTAAAC TTTGATGGTG GAAATGCATA CGAGCAAATT ATTGAAGCGA
    CGGAGAACTT TAGTGAAAAA TATTGCATTG GAGCAGGTGG TTATGCGTCT
    GTCTATGTAG CTAAATTATC AAATGGTAAA AATTTTGCAG TCAAGAAGAT
    AAATGCAACA GAGAATGGCC GTTTGATAAA CGAGCAAATG TTCTATCGTG
    AAATAGAGGC CACAATGCAA ATACGCCACA AGAACATTGT AAAAGTCTTT
    GGCTACTGCT GTACAGCACG AGATAAGTTT ATTGTCTACA AGTATATGAA
    AGGAGGAAAC TTGTTGACAG CTCTCAAGTC CTACAGAAGT GCAAGCGAGT
    TGGATTGGAA GCGCAGGTTA TGTATTGCTC AGGATGTTGC TCATGCCCTA
    TCTTACTTGC ATCACGACTG TTCAGATCCT ATAGTCCATC GAGATGTAAC
    AACCAAAAAC ATTCTGCTAG ATCTGGAGTT CAGAGCTTGT TTATCAGACT
    TTGGGATAGC TAAAATACTG GATGCTGATG GATCAGGACA CACAAGGCTC
    GCTGGTACAA AAGGATATCT TGCACCAGAG CTGGCATACA CTACGAAGGT
    GACAGAGAAA TGTGACGTTT ATAGCTTCGG GGTGGTAGTT CTTGAGCTGT
    TGATGGGATC TCACCCTGGA GACTTTGTTT CGTCGATCTC ATGCCCTAGC
    AAGAAAAGCA CACCGATGAA GGATTTGTTG GACACCAGAC TCCCGCCTCC
    AGCAGGTGAA GTTGCAAGCG AGATATTTGG ATTGATCACG GTTGCTATAC
    AGTGCCTTCA CCCCAATCCA TCAACTCGTC CGACGATGCC ATCCGCAATT
    CATTTGTTCT CCAAGTTTTC TAGGGCGGTT GATCTTGATT ATCTGCATGC
    TGACATCATG GAGTTCTGCC TTCTTTGAAC CTTGACCTTT GTATTCATTT
    TCTACTTGTG GAATGTTCCC GAGGATAAAG GGAACTACAC AGGTATTCTA
    CATCTTATGC CTTTGTTGAT GTGGGAAGGA AGGGAGCTAA TAGGTGTGTT
    GTTTTACAAG AATTGCTATC

    Gene models with high sequence identity

    1. AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
      E-value: 6e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN SERINE/THREONINE KINASE-RELATED 5.5e-84
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.5e-84
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Tyrosine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 37.22
    HMMPfam Serine/threonine-protein kinase-like domain 6e-47
    Gene3D no description 0.0000000000000048
    Gene3D no description 2.8e-45
    HMMSmart Serine/threonine-protein kinase domain 6e-37
    HMMSmart Tyrosine-protein kinase, catalytic domain 9e-18
    superfamily Protein kinase-like domain 1.1e-70

    See the detailed result >

    AT4G08850.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat receptor-like protein kinase family protein
    Computational Description
    Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR