K33938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33938

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33938

Determination of introduced cDNA(s)

  • J033090A04 - Rice Full-length cDNAs - Original: J033090A04

    full reading [+] show sequence

    Nucleotide sequence: J033090A04 - full reading 
    GACTCTGCAC ACGTCCCCAT CTCCCCCGTC TCTCCTGCGT TCTCTTCGCC 
    TACCTTACGA TAAACTTGGC CACGTCTCAA TCTCTCTCTC TCGCGCTCTC 
    CTCTCCTTCT ATAATACTCG GCCTCCCCCT CGCTTCTCGC TCTGTTTCTC 
    CGAGAATTAG GGGGGAGGTT GGAGCTGTGC AAGATGGTGA TTGCGCGCGG 
    CCTTCTCCGA TCGAATGCCT CTTCTTCCTC CTCTCAGGCA ATCAACTTAT 
    TGAAGTATGT AACTAGCACT GGAAGTCTGC AAGGGCACAC GCAAAATTTG 
    TGTGATGCAT CAACCAGACA TTTCAGTTCA GTACCATCGC CCCAGTACAA 
    CTCAACTGAA GAGAATGGGT TCAAGGGGCA TGGCATGTTG GCACCATTCA 
    CAGCTGGTTG GCAGAGCACC GATGTTCATC CGTTAGTCAT TGAAAGATCT 
    GAGGGTTCGT ATGTATATGA TATCGACGGA AAGAAGTATC TAGATTCTCT 
    TGCGGGACTA TGGTGTACAG CTTTAGGTGG TAGTGAACCT CGATTAGTCA 
    AAGCTGCAAC TGAGCAATTA CACAAGTTGC CCTTCTATCA CTCCTTTTGG 
    AACCGTACGA CCAAACCATC TCTGGATCTT GCAAAGGAAC TGCTTAGCAT 
    GTTCACTGCA AGGGAAATGG GAAAAGTGTT CTTCACAAAT AGTGGTTCAG 
    AAGCAAATGA TTCTCAGGTA AAACTGGTCT GGTATTATAA CAATGCACTG 
    GGAAGGCCAG ACAAGAAGAA ATTTATTGCA CGATCAAAAT CATACCATGG 
    ATCAACACTA ATATCAGCTA GTCTATCCGG TCTTCCTGCA CTGCATCAGA 
    AGTTTGATCT GCCTGCACCT TTTGTTCTGC ACACGGACTG CCCTCACTAC 
    TGGCGCTTCC ATCTTCCTGG TGAAACAGAA GAAGAATTTG CAACTAGACT 
    TGCCAATAAT TTAGAGGAAC TTATCCTCAA AGAAGGACCA GAAACAATTG 
    CTGCATTCAT TGCAGAGCCT GTGATGGGTG CTGGTGGTGT CATACCTCCT 
    CCAAAGACCT ATTTTGAAAA GGTCCAAGCG ATCGTTAAGA AGTATGACAT 
    CCTTTTCATA GCAGATGAGG TCATTACTGC ATTTGGAAGG TTGGGAACCA 
    TGTTTGGAAG TGATATGTAT AACATCAAGC CAGATCTAGT CTCCATGGCC 
    AAGGCGCTTT CATCTGCCTA TGTGCCCATT GGAGCAATTA TGGTTAGCCC 
    AGAAATATCA GATGTTATTC ATTCTCAGAG CAATAAGCTC GGTTCATTTG 
    CTCATGGATT TACATACTCT GGCCATCCAG TTGCATGTGC TGTCGCCATA 
    GAAGCCCTGA AAATTTATCA GGAAAGGAAC ATTCCTGATC ATGTGAAGCA 
    AATTTCTCCA AGGTTCCAGG AGGGAGTCAA GGCCTTTGCA GGAAGTCCGA 
    TTGTTGGAGA GATACGTGGT GTAGGGTTGA TACTTGGAAC TGAATTCGCA 
    GACAACAAAT CGCCAAATGA TCCATTCCCT GCTGAATGGG GCGTCGGCGC 
    GATCTTTGGA GCGGAGTGCC AGAAGCGCGG CATGCTGGTT AGAGTTGCTG 
    GAGACAACAT CATGATGTCA CCACCATTGA TAATGACCCC TGATGAAGTC 
    GAGGAGCTGG TGAGCATCTA TGGAGATGCA CTCAAGGCCA CCGAGGAGAG 
    GGTGGCTGAG CTGAAATCCA AGAAGAACAA TTAGACCGAG TTGACAACTC 
    CTCATCTTGC AACTGCACGA GACGACGATG ACGATGATAA TGCTGGCAGC 
    GATGATGATG ATGGTGATGG TGTTCTTGGT GGATGTACAG AGTAATAATC 
    CCTCGTCTGT CAGAAAACTC TACTCAGAGA ACAGTAATAA CGCTGTTCTT 
    AGCGTGCAAA AAATAATCAA AACAGCGATC ATGCATTCAC CCAGAACCGG 
    TGAATCTTCA CCAGATTTCA GTCTTACGCA CGGGATTAGC TGCCGTGGTG 
    AACTGGTGGT GACTGTCATC TTGTAGACCA AATCAGGTTG GAATAAATCA 
    AATTTACATG AAGTCGCATG

    Gene models with high sequence identity

    1. AT3G22200.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 0; Score: 778.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferase class-III 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.1e-78
    superfamily Pyridoxal phosphate-dependent transferase, major domain 6.7e-123
    HMMPanther AMINOTRANSFERASE 2.1e-225
    HMMPanther Aminotransferase class-III 2.1e-225
    HMMPfam Aminotransferase class-III 7.4e-87

    See the detailed result >

    AT3G22200.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Curator Summary
    Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.
    Computational Description
    POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); FUNCTIONS IN: 4-aminobutyrate:pyruvate transaminase activity, cobalt ion binding, 4-aminobutyrate transaminase activity, zinc ion binding; INVOLVED IN: in 11 processes; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1); Has 35485 Blast hits to 35478 proteins in 2746 species: Archae - 740; Bacteria - 23053; Metazoa - 633; Fungi - 902; Plants - 413; Viruses - 17; Other Eukaryotes - 9727 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR