K33942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33942

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33942

Determination of introduced cDNA(s)

  • J023038N13 - Rice Full-length cDNAs - Original: J023038N13

    full reading [+] show sequence

    Nucleotide sequence: J023038N13 - full reading 
    GCGAGGATTT GGAGTTGAAT TGTGGGGAGG GGGACCTCGC GGGTGTTGCC 
    GGTTTGGAGC CCAAGATAGG GTTATGAGCT GCTTCGCGGA CCGCCGCTGC 
    TACGCCGCCA GCCGCCGCCA GGACGGCCTC CTCGTGTTCA TGTTCTTCAT 
    CTCGATTCCC ATACGTACTA GTAGCAGTAG TAGTAATAAT TGTAATTCCA 
    GTAGTAGTAT TAGTAGTAAT CTCCTGTAAG CGGAGTTCCT CCTCGCGGCT 
    GCGTGTACGG GGACGGGAGG ACCTTCTTCC TCTTCGTGTT CATCTTCTTC 
    TTCTTCTTCC TCTCTTCCTT CGGCTTCGGC GCTGGCGGCT ATGGATCCCA 
    ATAGCCTCAA AACTGGAGGC CTCTTGCTTC CGACCATTGA GAGGCAATGT 
    GCTTCGCCTC CATCCGTCAT CGTGATCGGT GGGGGAATTT CAGGGGTTGC 
    AGCAGCCCGT GCTCTCTCCA ATGCTTCGTT TGAGGTGACT GTTTTGGAGT 
    CCAGAGATCG CGTAGGCGGT CGTGTCCATA CCGATTACTC TTTCGGATGC 
    CCAATTGATA TGGGAGCCTC ATGGCTCCAC GGCGTTTGTA ATGAGAACTC 
    CTTGGCACCA TTGATTGGCT ATCTTGGGCT GAAATTATAT CGCACTAGTG 
    GCGACAACTC TGTTCTGTAT GATCATGATT TAGAAAGTTA TGCACTCTTT 
    GATAAGGCTG GCCATCAGGT CTCAAAGGAG ACAGTTGCTA AAGTTGAAGA 
    AACATTTGAA AGAATTCTTG ATGAGACAGT TAAAGTGCGT GATAAGCAGG 
    AACATGACAT GCCCCTTCTA CAGGCGATTT CACTTGTTCT TGAGAGGCAC 
    CCCCATCTGA AGTTACAAGG GATAGATGAT CAAGTCTTGC AATGGTGTGT 
    CTGTCGGCTT GAGGCATGGT TTGCTGCAGA TGCTGATGAA ATATCTCTGA 
    AAAACTGGGA TCAGGAGCAT GTTCTTACCG GTGGCCATGG TCTGATGGTG 
    AACGGATACT ATCCTATAAT TCAGGCTCTT GCACAAGGTC TAGATATCCG 
    GCTTAATCAA AGGGTAACCA AAATTGCCCG CCAATTCAAT GGAGTGACAG 
    TTACCACTGA AGATGGAACA AGTTACTCTG CCGATGCTTG CATCATTACA 
    GTACCGCTCG GTGTGCTCAA GGCAAACATA ATCAAGTTCG AGCCTGAGTT 
    GCCCTCATGG AAGAGCTCTG CAATCGCAGA CCTTGGTGTC GGTATCGAGA 
    ACAAGATCGC CATGCACTTC GATACAGTCT TCTGGCCTAA TGTTGAGGTG 
    CTGGGAATGG TTGGCCCAAC GCCTAAAGCA TGTGGGTACT TCCTGAACCT 
    CCACAAGGCC ACAGGCAATC CGGTCCTCGT CTACATGGCC GCCGGTAGAT 
    TTGCTCAAGA AGTGGAAAAA CTGTCAGACA AGGAGGCCGT AGATCTGGTC 
    ATGTCTCACC TGAAGAAAAT GCTACCTGAC GCCACTGAAC CTACGAAGTA 
    TTTGGTTTCA CGCTGGGGTT CTGACCCGAA CTCGCTGGGT TCCTACTCGT 
    GCGACCTGGT CGGGAAGCCG GCCGACGTGT CGGCGCGGTT CGCCGCACCG 
    GTGGAGAACC TCTACTTCGC CGGCGAGGCG GCCAGCGCCG ACCACTCGGG 
    GTCCGTCCAC GGCGCCTACT CGTCGGGGAT CGCCGCCGCC GATGAGTGCC 
    GGAAGCGCAT CCTGATGCAG AAGGGCATCC CTGACCTCGT CCAGGTCAAG 
    GCCTACGAGG AGATGGCCGG AGTCATTGCT CCCCTTCAGA TTTGCAGGAC 
    CTGAAAAAAC TGAACCTGCT CCACCCTGCC ATTGTCATGG AATCTGGATT 
    GATTCAATTG CCATGCCTAT GCCCTGGAAT CTTGATGATT CAATCACTCA 
    TACAAGTTCA AGTTCATGTA GGGGATTAAC TGCATGAATC AAAATTATTA 
    ATTAATAATT ATGTAATTGT CATGTTATTA TTGAATAAAT AAATCGAGAT 
    CATGCTTGAG ATCTTTGTAC TGGGACACAG TTTCAATTAA TTAATGCTAG 
    TAACAACCTT GGAGCG

    Gene models with high sequence identity

    1. AT2G43020.1 [+] show detail - polyamine oxidase 2
      E-value: 5e-164; Score: 575.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Flavin-containing amine oxidase 0.00000000012
    FPrintScan Flavin-containing amine oxidase 0.00000000012
    FPrintScan Flavin-containing amine oxidase 0.00000000012
    FPrintScan Flavin-containing amine oxidase 0.00000000012
    HMMPfam Amine oxidase 1.1e-101
    superfamily FAD/NAD(P)-binding domain 5.8e-53
    superfamily FAD-linked reductases, C-terminal domain 5.2e-28
    Gene3D no description 8.5e-60
    HMMPanther AMINE OXIDASE 2.1e-276
    HMMPanther AMINE OXIDASE 2.1e-276
    Coil coiled-coil 0

    See the detailed result >

    AT2G43020.1

    Model type
    Protein coding
    Short Description
    polyamine oxidase 2
    Computational Description
    polyamine oxidase 2 (PAO2); FUNCTIONS IN: primary amine oxidase activity, oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: polyamine oxidase 3 (TAIR:AT3G59050.1); Has 6381 Blast hits to 5960 proteins in 1057 species: Archae - 96; Bacteria - 2371; Metazoa - 1412; Fungi - 575; Plants - 752; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR