K34010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34010

Determination of introduced cDNA(s)

J023009K09 - Rice Full-length cDNAs - Original: J023009K09

full reading [+] show sequence

GATTCCCCCA ATTCATTCCT TCGCCGAACC ACCAGAGTGG TGGAGAGTAG 
CTAGCAGAGT AGCAGAGCGG TGGGAGCAGC AGCAGCCGTA GCCGCATCCG 
GAGAGATTCG GGCAGGAGAA GCCGCCGCAG CGATGGGCGC GCCGGTGCGC 
GGCGCCCTCG TCTTCTTGCT TCTTCTCGCC GGCGCGGCCG CGGAGACGGC 
GCCGGAGGAA CCCACATTGC CCTCCGCCGC CGCCGATGGG GCGGCTAGTA 
GCGGGACAAC ATCTGGCGCT GGTGCTGGAA CGGGAATCAA CTCGAACTCG 
GTGCTGGTGG CGCTGCTGGA CTCGCATTAC ACGGAGCTGG CGGAGCTGGT 
GGAGAAGGCC CTGCTGCTCC AGACGCTGGA GGACGCCGTC GGCAAGCACA 
ACGTCACCAT CTTCGCGCCG CGGAACGAGG CGCTGGAGCG TGACCTCGAC 
CCGGAGTTCA AGCGCTTCCT GCTCGAGCCG AGGAACCTCA AGTCGCTCCA 
GTCGCTGCTC CTCTTCCACG TCCTCCCCGC CCGCCTCCCC TCCGGGTCCT 
GGTCCGCCGT CTCCCACCCC ACGCTCTCCG GCGAGGAGGT TGAGCTCGCC 
GCCGCCGCCA ACGACGGCGC GATGCGCGTC GCCCACGCCG CCGTCACCCG 
CCCGGACGCC GTGCTCAGGC CGGACGGTGT CATCCACGGG ATCGAGCGCC 
TCCTCGTGCC GCGCTCTGTC CAGGAGGACT TCAACCGCCG CCGCAGCCTC 
GCCGACATCT CCGCCGTGCT GCCAACTGGC GCGCCCGAGG TTGACCCGAG 
GACGCACCGC CTCAAGAAGC CGGCGCCGCC CGTGCCACCC GGCGCGCCCC 
CGGTGCTTCC GATCTGGGAC GCCATGGCCC CCGGCCCATC CATCGCGCCG 
GCGCCTGCCC CTGGACCGGG CTCCGGGAAG CACCACTTCG ACGGCCACAG 
CCAGGTGAAG GACTTCATCC AGACCCTCCT CCTGTACGGC GGCTACAACG 
AGCTCGCCGA CATCCTCGTC AACCTCACCT CGCTCGCCAC CGAGATGGGC 
CGGCTCGTCT CCGAGGGGTA CGTGCTCACC GTGCTCGCGC CCAACGACGA 
GGCCATGGCG CGCCTCACCA CCGACCAGCT CAGCGAGCCC GGCTCGCCGG 
AGAACATCCT GTACTACCAC ATGATCCCGG AGTACCAGAC CGAGGAGAGC 
ATGTACAACG CGGTGCGGCG GTTCGGCAAG GTGCGCTACG ACACGCTGCG 
GCTGCCGCAC AAGGTGGTGG CGCGCGAGGC CGACGGCTCA GTCAAGTTCG 
GCCATGGCGA GGGCTCGGCG TATCTCTTCG ACCCGGACAT CTACACGGAT 
GGCAGGATCG CAGTGCAGGG CATTGACGCC GTGCTGTTCC CGCCGGATGA 
CACCAAGACG GCGCCGGACA CGGCGCCGGT CAGGAGGGCG CCCGCCGTCA 
CCGGCACTCG CAAGAAGAAC AAACTCCGGA GAGGCAAGTT GTTAGAAGCA 
ACGTGCCAAA TGGCTGGCAT CCTTGGTCAG CGATTGCGAT TCGCAAGCTG 
CCAGTAGACG GCGAAAGATT GATCTCATGA TACCGAAACA CGAACTAGAA 
TGAGGTGATG GACTGTGCTG GAGCCGTCCA CATTACCATT TGTTTTTTTT 
TATTTTTATT TTTGTTTATT ATTACGAATA ATAAATCAGG TGGGGAATGT 
AATCTGGTGG CTGTTGGTGT CTGAAAAAAA AAAAGGCAGG AAAATGTTCA 
TACTTGAAGA CCGAGATCTT CTGTGTATAG GAGCGTTTTT TTTTATATTT 
TTTTCCGTCA TTTTTTCTTC TTTTTCTGTT TTGACAGAAT GCCGAGTAAA 
CAATTAAACA TCACAGCATC CTTGGTGTTA AAGCTAGTAG TAATCAATTC 
TGC

Gene models with high sequence identity

AT2G35860.1 [+] show detail - FASCICLIN-like arabinogalactan protein 16 precursor
E-value: 4e-144; Score: 508.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	FAS1 domain	4.6e-14
HMMSmart	FAS1 domain	4.9e-16
ProfileScan	FAS1 domain	18.577
ProfileScan	FAS1 domain	10.589
superfamily	FAS1 domain	3.3e-22
superfamily	FAS1 domain	7.9e-21
HMMPfam	FAS1 domain	1.7e-22
HMMPfam	FAS1 domain	1.7e-07

See the detailed result >

AT2G35860.1

Model type: Protein coding
Short Description: FASCICLIN-like arabinogalactan protein 16 precursor
Computational Description: FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).
Link: InterPro Scan - TAIR