K34019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34019

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34019

Determination of introduced cDNA(s)

  • J033109D16 - Rice Full-length cDNAs - Original: J033109D16

    full reading [+] show sequence

    Nucleotide sequence: J033109D16 - full reading 
    GGAAGAGGAA AAGCTGTTCG TCTCCCCAAC CCCAACCGCG ACGAACTAGG 
    GCGACGGGCC ATCGCCGTCG TCGCCGCCGC CGCCGCAGCT CGCGCTCGCT 
    CTCCTCCTCT GGCGCCGTTC CTCTTTCTCC TGCGTCGCCC CATCGACCTC 
    GACCGCTCAG CGTCTGTTTG TAACTTTCTG TTATGGGTGA CTACACCATC 
    CAGATTAGCA CCAAGCTAAT CGACCAGCTT GCTCGTGATG ACGAGAAGAT 
    CAAAAAGAAA ACCAGGAAAC CCAAGCCTAA GAAGACTGTC AAACAACATC 
    AACAAGAGCC CCAGGACAAC TCAAGGGAAC TCCCAGCTTC TGAACCCAAG 
    GCTCCTCCTG GCTGGCCACT GCAGCCTCCC ATGTATCTCC CCGTAACCCC 
    TGCTCCTCCA CCACCCCCAC CTGCTTTTTC AGAGCTGGAA GCCATCCGTG 
    CCGTTCTGGA AGAGAGCGAA AAGGTTCAGG AGAAGCTGGA TAAGCAGCAT 
    GCTGGGATGC GTGATGAACT CATCAAGAAA TCAAAAGACC TGCGTGACAA 
    GGAGTTCAAG CTGCCGTACC AAAACCCCAC GCCATGCACT GAGGAGAGGT 
    CAAACTGCCG CCAGTGTTAC GTGAGCAATG CACAGGACCC ACTCAAGTGT 
    GCTGAGGCAG TCAAGAGATT TGAAGCATGT GTTCGCCTGG CGAGGCAAAG 
    GGGCAACACA AAAGTTGCTC AGTAGCCCTG GAAGATTTGT GATGAGGAAA 
    GAACTGATAT ACGATTTTGC TTTGCTGTGA TGATTTAATA ACCTGGAATT 
    TTGATGAGAC CTAAGACATA TTTCTACAAT TCTAATGGCA TCGCACCAGG 
    CTAGGTGAGG AAGCTACAGA TCCTTGAGTT TAGGGATTCT GTATTGCAAA 
    TATTGGGTAA GAATGAAACA TGAATGCTGG GTGTTTTTCC C

    Gene models with high sequence identity

    1. AT4G12340.1 [+] show detail - copper ion binding
      E-value: 2e-23; Score: 107.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G12340.1

    Model type
    Protein coding
    Short Description
    copper ion binding
    Computational Description
    copper ion binding; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033035N15 - Rice Full-length cDNAs - Original: J033035N15

    full reading [+] show sequence

    Nucleotide sequence: J033035N15 - full reading 
    GGAAGAGGCA AACCAAACCA AACCCAACCC CTCCTCCGCC GCGGCCCGAA 
    ACCCCACCGG ATCGGCGGCG GCGGCGGCGG CAGGAGGCCG GCGGGCGGAG 
    GAGATGTCGC TGACGGAGGT CAGGATCGGG GAGGAGGTGT GGCTCACCTG 
    CCTCTCCCAC GCCCTCACCA CCGAGACGGA GGAGGTCATG GGCCTCCTCT 
    TCGGCGACAT CAAGCATTCG AGCAGGGGCG GGGTGACTGC TCTGATATGG 
    GGGGCGTCGC CGCAGATGAG GTGCGAGCGG AAGAAGGACA GGGTGGAGGT 
    CAACCCCGAG CTGCTCGCGG CGGCGACGGC GCAGGCCGAG AGCTTGTCGG 
    CCACCATCGG CGAGAAAACG AGGGTGATTG GATGGTACCA CTCGCACCCG 
    CATATCACCG TTCTGCCTTC CCATGTAGAT GTTCGGACCC AGGCAATGTT 
    TCAGTTGATG GAGCCAGGTT TTGTGGGTCT GATATTCTCT TGTTTTAGCG 
    AAGATGCTCA AAAGGTTGGA AAAATCCAAG TGATTGCTTT TCAGTCACTT 
    GGTGGAAATC AGCAATCTGT TGTTCCTGTT AATGATCCAG TCATTAACCT 
    TGAATCATCT TGGAGTTCGT TGGATGATAC CTCACATCCG GCATTGATTG 
    AAGGCATTGA ACAAGACACG GGGGATTCTA AATCTTCAAG AAATAGCAAG 
    GTGTGGGCAA AATCTTCTGA TGTGGATTTC TATCCTCATT TTGACGCCAA 
    TCACTCAGCA AAACATCAAT CCAAAGAAAA TGCTATAGTT GCATACGATC 
    CCAATAATGC ACCTGAGACC CCTGTTGATC TAGATGAATC AGATATGACC 
    CCAAGCATCC AGGAGGCGTT GCACAGGTCA AACATGGACA TTAGTGGTGC 
    AGAATATGTA AGAAAGGAGG TGCCACTTTA TGTATTTCCG ACCAGGCATC 
    TGCTAAAGCT GGACACCACA TTAACTTCTT ACTGTGATAT GCAACATGTC 
    GTTTTCGAAG AGGAAAAATC AGCATATAAT CAAGCCATGC ATCAAAATAT 
    TCGTGATGGG AAGATCCACC CACTTACATC TATTCACCAT GCATCTACAT 
    ACAACTCATC TCTCTGCAAA TTAATGGAAT ACTGTTTGAG CCCTGCTATA 
    ACTGTACTTC AGGATCGTCT GAAGGAAAAT GAACTTCGGT TATCTATGCT 
    AATGGAGGAG GCTAAACAAC TTGAGGCAGA GAACCAGAGC ATGAGAAATG 
    ATTCTCCTCG TCGCTTGATG TATCATGGGA CTAGTGGCAC CAGTTCTCTG 
    ATGGCACAGG ATAAGCAAAT GAGCCCCAGA AGTCCTAGCG GCACCGGCCG 
    GAGAAAGGCT TCCTGATTTC AATCTTGTTC ACTTGACATG GTGAATATCG 
    TGAGCTGCGG TTCCACCCCT TGCTATCTGC AATCCCCATT TTTCCGGTGT 
    ATGAAGGTGT GTACAGTGGC TTTGTACATA CCTCAACTCC TCAGCACCAG 
    TGCTGTTGTA AAAGTTACTG CGGCCTCCCT TGGCTTTGTA CTGCTGTTCC 
    TCGCGCTGCT GCTTAATTTG CGCCAAATCC CTTTCCCTTC CGAGGGCTTA 
    TTCCATGAGC TTGTAGTTTG TGCTGGGGTG GTTGCTTTCT TTGAGCTATT 
    GCTAATTAAG ATGCAATGCA TTTCCCGTGC AGGCAAAGAC GAAGCTTGTT 
    TTTGCTTTGC TGTTGGAACA GATCATGTAC TATTACCAAT CCAAAAGCTG 
    AAATGCTCAG GCACACTTGC TGCCAAAGTG TCG

    Gene models with high sequence identity

    1. AT1G80210.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 4e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mov34/MPN/PAD-1 1.7e-24
    Coil coiled-coil 0
    HMMSmart Mov34/MPN/PAD-1 4.5e-12
    superfamily JAB1/MPN domain 1e-16
    HMMPanther C6.1A 7.8e-128
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 7.8e-128

    See the detailed result >

    AT1G80210.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G06820.2); Has 1011 Blast hits to 924 proteins in 229 species: Archae - 0; Bacteria - 3; Metazoa - 473; Fungi - 224; Plants - 189; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR