K34021

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34021

Determination of introduced cDNA(s)

  • J033127E04 - Rice Full-length cDNAs - Original: J033127E04

    full reading [+] show sequence

    Nucleotide sequence: J033127E04 - full reading 
    GACTCTACAA CAGATCGGAA ACCTCGCGGG CGGCGGCGGC GGCGGCGCGG 
    GTAAGCGAGC GGACACCGGC GACGAGCGCG AGGAGGAGGA GGAGGAGGAA 
    GGAGAAGATG GCGGCGACGC TGTCGCAGCT CGACGACGGG ATCGTCCGCG 
    GGATGGCCAT CGGCGCGGTA TTCACCGACT ACGCTGGGAA GATAAACTGC 
    CTCGACTTCC ACCGCAAGGA GGATCTCCTC GTCACCTCCA GCGAGGACGA 
    CTCCATACGC CTCTACAACA TCACCAGCGC CACGTTGTTG AAGACTACAT 
    ATCATAGGAA ACATGGTGCT GACCGTGTCT GTTTCACTCA CCATCCGAGT 
    TCTATCTTAT GTTCATCAAG ATACAATCTA GAGTCAGCAG AGTCACTTCG 
    TTATTTATCA CTGTATGACA ACCGTTGCTT AAGATATTTT AAAGGACACA 
    AAGACAGGGT TGTTTCACTA TGTATGTCAC CTGTCAACGA TAGTTTTATG 
    TCAGGATCAC TTGATCACAG TGTCAGGATA TGGGATCTTC GTGTAAATGC 
    TTGTCAGGGT ATACTACGTT TGCGTGGTAG GCCTTCTGTT GCATATGATC 
    AGCAGGGACT TGTTTTTGCC GTGGCAATGG AAGGAGGTGC TATTAAGCTA 
    TTTGATTCCC GGTCATATGA CAAAGGTCCC TTTGACACTT TCTTGGTTGG 
    TGGAGATACA GCTGAAGTTT CTGACATCAA ATTTAGCAAT GATGGCAAGT 
    CCATGCTTTT GACAACAACC AACAACCATA TATATGTTCT GGATGCATAT 
    GGAGGGGATA AGAGGTGTGG CTTTAGTCTG GAGTCATCTC CCAATGTAGC 
    AACTGAAGCT GCTTTTACTC CAGATGGCCA ATATGTAATT TCAGGATCTG 
    GTGATGGTAC CTTGCATGCT TGGAACATCA ATACAATACA AGAGATTGCT 
    TGTTGGAACA GTCACATCGG TCCTATCACT GCTTTGAAGT GGGCTCCCCG 
    TCGAGCAATG TTTGCAACTG CGTCAACTGC CCTAACTTTC TGGATTCCCA 
    ACAATTCCAG TTCGAATTAG GTGCCTAGCA AAAAGGATGG AACGTGTGAT 
    ATGCTGATTC AACAAACACT TGTATCCTGT TCTTTCCTGC ACAAGATGGG 
    TATCGTGTAT GAAGTATCAA TCTCTTTATT ACCATCTGTG GCAAAAAATG 
    ATGATGTACA CCTTCCCATT GTATTCTCTT ATGGCTATTG TTAATACACA 
    TAAAATTTTC TGCATCAGTC

    Gene models with high sequence identity

    1. AT5G14530.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 8e-146; Score: 513.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 7e-51
    HMMSmart WD40 repeat 0.011
    HMMSmart WD40 repeat 0.000000029
    HMMSmart WD40 repeat 7.4
    HMMSmart WD40 repeat 0.00034
    HMMSmart WD40 repeat 8.3
    HMMPfam WD40 repeat, subgroup 0.00025
    HMMPfam WD40 repeat, subgroup 0.00000023
    HMMPfam WD40 repeat, subgroup 0.00015
    HMMPfam WD40 repeat, subgroup 0.057
    HMMPanther WD40 REPEAT PROTEIN SWD2 1.9e-125
    PatternScan WD40 repeat, conserved site 0
    Gene3D WD40/YVTN repeat-like-containing domain 1.8e-50
    ProfileScan WD40 repeat 2 11.043
    ProfileScan WD40 repeat 2 14.318
    ProfileScan WD40 repeat 2 11.879
    ProfileScan WD40-repeat-containing domain 23.546
    FPrintScan G-protein beta WD-40 repeat, region 0.0000065
    FPrintScan G-protein beta WD-40 repeat, region 0.0000065
    FPrintScan G-protein beta WD-40 repeat, region 0.0000065

    See the detailed result >

    AT5G14530.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G66240.1); Has 22372 Blast hits to 13576 proteins in 557 species: Archae - 62; Bacteria - 5277; Metazoa - 7900; Fungi - 4335; Plants - 2143; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR