K34025

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34025

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34025

Determination of introduced cDNA(s)

  • J013116D04 - Rice Full-length cDNAs - Original: J013116D04

    full reading [+] show sequence

    Nucleotide sequence: J013116D04 - full reading 
    GAACTATTTA TTGGTCCTTC TGGATCTCGG AGAAACCCTC CATTCGTTTG 
    CTCGTCTCTG ACCACCATTG GTTCCTGAAA TTGAGTCATG GCTGCCAAGC 
    TAGCTCGCCT CCACAGTCTC CGCGAACGCC TCGGTGCCAC CTTCTCGTCT 
    CATCCCAATG AGTTGATTGC ACTCTTCTCT AGGTATGTTA ACCAGGGAAA 
    GGGAATGCTC CAGCGTCACC AGCTGCTTGC GGAGTTCGAT GCCTTGATCG 
    AAGCTGACAA AGAGAAATAT GCTCCCTTTG AAGACATTCT CCGGGCTGCT 
    CAGGAAGCCA TTGTGCTGCC GCCCTGGGTT GCACTGGCCA TCAGGCCAAG 
    GCCTGGTGTC TGGGACTACA TTCGGGTGAA TGTAAGTGAG TTGGCAGTGG 
    AAGAGCTGAG TGTTTCTGAG TACTTGGCAT TCAAGGAACA GCTTGTTGAT 
    GGACACACCA ACAGCAACTT TGTTCTTGAG CTTGATTTTG AGCCCTTCAA 
    TGCCTCCTTC CCGCGCCCGT CCATGTCCAA GTCCATCGGA AATGGGGTGC 
    AGTTCCTTAA CCGTCACCTG TCGTCCAAGT TGTTCCAGGA CAAAGAGAGC 
    CTCTACCCCT TGCTGAACTT CCTGAAAGCC CATAACCACA AGGGCACGAC 
    AATGATGCTG AATGACAGAA TTCAGAGCCT TCGTGGGCTC CAATCATCCC 
    TTAGAAAGGC AGAAGAATAT CTGATGGGCA TTCCTCAAGA CACGCCCTAC 
    TCGGAGTTCA ACCACAGGTT CCAAGAGCTC GGTTTGGAGA AGGGTTGGGG 
    TGACTGTGCA AAGCGTGTGC TTGACACCAT CCACTTGCTT CTTGACCTTC 
    TTGAGGCCCC TGATCCGGCC AACTTGGAGA AGTTCCTTGG AACTATTCCA 
    ATGATGTTCA ATGTTGTTAT CCTGTCTCCG CATGGATACT TTGCCCAATC 
    CAATGTGTTG GGATACCCTG ATACTGGTGG TCAGGTTGTG TACATTTTGG 
    ACCAAGTCCG CGCTTTGGAG AATGAGATGC TTTTGAGGAT CAAGCAGCAA 
    GGCCTTGATA TCACACCTAA GATCCTCATT GTAACCAGGC TGTTGCCTGA 
    TGCTGTTGGT ACTACATGCG GCCAGCGTGT GGAGAAGGTT ATTGGAACTG 
    AGCACACTGA CATTCTTCGT GTTCCATTCA GGAGTGAGAA TGGTATCCTC 
    CGCAAGTGGA TCTCCCGTTT TGATGTCTGG CCATTCCTGG AAACATACAC 
    TGAGGATGTT GCAAACGAAA TTATGAGGGA AATGCAAGCC AAACCTGATC 
    TCATCATTGG CAATTACAGT GATGGAAACC TTGTTGCCAC TCTGCTGGCT 
    CACAAATTAG GAGTTACCCA GTGTACCATT GCTCATGCCT TGGAGAAAAC 
    CAAATACCCC AACTCAGACA TATACTTGGA CAAGTTTGAC AGCCAGTACC 
    ACTTCTCATG CCAATTCACT GCTGATCTTA TCGCCATGAA TCACACTGAT 
    TTCATCATCA CCAGTACATT CCAAGAAATT GCTGGAAGCA AGGACACTGT 
    GGGGCAGTAT GAATCACACA TTGCATTCAC CCTTCCTGGG CTTTACCGAG 
    TTGTGCATGG CATAGATGTT TTTGATCCCA AGTTCAACAT TGTCTCTCCT 
    GGAGCTGACA TGAGTGTCTA CTTCCCGTAC ACCGAGGCTG ACAAGAGGCT 
    CACTGCTTTC CACCCTGAAA TTGAGGAGCT TCTCTACAGT GAAGTCGAGA 
    ACGATGAACA CAAGTTTGTA TTGAAGGACA AGAACAAGCC AATCATCTTC 
    TCCATGGCTC GTCTTGGCCG AGTGAAGAAC ATGACAGGTC TGGTTGAGAT 
    GTATGGTAAG AATGCACATC TCAGGGATTT GGCAAACCTT GTGATTGTTT 
    GTGGTGACCA CGGCAATCAG TCCAAGGACA GGGAGGAGCA GGCTGAGTTC 
    AAGAAGATGT ACGGTCTCAT TGACCAGTAC AAGTTGAAGG GGCATATCCG 
    CTGGATCTCA GCTCAGATGA ACCGTGTTCG TACCGGGGAG ATGTACCGAT 
    ACATTTGTGA CACCAAGGGA GTCTTTGTCC AGCCTGCATT CTATGAAGCG 
    TTTGGTCTGA CTGTCATCGA AGCCATGACA TGTGGTTTGC CAACAATCGC 
    AACATGCCAT GGTGGCCCTG CTGAGATTAT TGTTGATGGG GTGTCTGGTC 
    TGCACATTGA TCCTTACCAC AGTGACAAGG CTGCTGATAT CTTGGTCAAC 
    TTCTTTGAGA AGTGCAAGCA GGATTCAACC TACTGGGACA ATATTTCACA 
    GGGAGGTCTG CAGAGGATTT ACGAGAAGTA CACCTGGAAG CTGTACTCTG 
    AGAGGCTGAT GACCTTGACT GGTGTATACG GATTCTGGAA GTACGTAAGC 
    AACCTTGAGA GGCGCGAGAC TCGCCGTTAC ATTGAGATGT TCTATGCTCT 
    GAAATACCGC AGCCTGGCCA GCGCCGTCCC ATTGGCTGTC GATGGAGAGA 
    GCACATCCAA GTAATGGAGG GGAAAATATG CATCTTCAGC AGGAGAAGCC 
    GTCAGCTGCA TTCGAATTTG ATAATTTTCT GTAGTTGTCA TTTGGCATCC 
    ATGTTTGCCA TGGATGTGTA CTATGTCTAA GGTTTCAGTA CTTTTGCGAG 
    ATTTTGGGCA GTGCTTGCCT CAAATAAACG CCGGTTCCTG GTGTTTATCG 
    TTCAGAATTC AATGCAATGT TTTATTGCCG CGCTTCCTCA ATCTGTCATG 
    TTGAATGACC ACTCCCTAGT GCCCTACTGT T

    Gene models with high sequence identity

    1. AT3G43190.1 [+] show detail - sucrose synthase 4
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Sucrose synthase, plant/cyanobacteria 0
    HMMPfam Sucrose synthase 0
    HMMPfam Glycosyl transferase, group 1 5e-33
    HMMPanther SUCROSE SYNTHASE 0
    HMMPanther GLYCOSYLTRANSFERASE 0
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 5.3e-45

    See the detailed result >

    AT3G43190.1

    Model type
    Protein coding
    Short Description
    sucrose synthase 4
    Curator Summary
    Encodes a protein with sucrose synthase activity (SUS4).
    Computational Description
    sucrose synthase 4 (SUS4); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, response to hypoxia; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 1 (TAIR:AT5G20830.2); Has 7692 Blast hits to 7689 proteins in 1582 species: Archae - 293; Bacteria - 4740; Metazoa - 106; Fungi - 81; Plants - 801; Viruses - 0; Other Eukaryotes - 1671 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR