K34103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34103

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34103

Determination of introduced cDNA(s)

  • J023125E09 - Rice Full-length cDNAs - Original: J023125E09

    full reading [+] show sequence

    Nucleotide sequence: J023125E09 - full reading
    GATCCCCCCT CGACAACTAG CCCACCGCCA CCGCCACCGC CGCCGAGGGC 
    GATCCGATAT GCATTTGCTG CTCCCGTAGA AGGCGCGCGT CGCAGCAATG
    GAGGCGGAGG ACGACGAGCG AGCCGAGGCG GAGGCGGAGG CGCGGCGGGA
    GAAGGAGGCC GGCAACGCCG CCTACCGCAA GCTCTACCTC GAGACGGCCG
    TGCGCCACTA CACCCGCGGC GCCCTCCTCG ACCCCCGCGA CATCTCCTTC
    CTCACCAACC GCGCCGCCGC CTACCTCCTC ATGTCCAAGT ACAAGGAGTG
    CGTGAGGGAT TGCGACGAGG CGGTGGAGAA GGGGCGGGAG CTACGCGCCG
    ACAACAAGCT GGTCGCGCGG GCGCTGGCGA GGAAGGCGTC GGCGCTGCTC
    AAGCTCGCCG CCTGCGCCGC GGACTACGAC CCGGCGATCA GGGCGCTGCA
    GCAGTCGCTG GCCGAGCACT ACAGCGAGGA GACGCTCGCC AAGCTGGGCG
    AGGCGGAGGA AGCCAGGAAG GAGATTGAGG AGCGGGAGCG GCTTGATCAG
    GAAGCTGCCG ATCACCACCG AGACAGAGGC AACGTTTTCT TCAAGCAGAA
    AAGGTACCAG GAAGCAGCAA TGCACTATAC TGAAGCCATG AAAAAGAACC
    CAAAAGATCC CAGGGTTTTT AGCAACAGAG CCCAATGCCA CATCTACCTA
    GGAGCATTGC CTGAAGGTCT TGAAGATGCA GATAAATGCA TAGCGTTGGA
    TCCTACTTTT CTGAAAGGCT ATCTGCGTAA AGCTAAAGTT CAGTTACTTA
    TGGGCAATTA TGAAATTGCT CTGGCAACTT ATGTAGAGGG TTTGAAGTGT
    GACCCAAACA ACCTCGAAGT TCTTGATGGC TTAAGGAGAT GTGCAGCATG
    CATTAAAAGA GCTAATGGCG GTGATTCTAG AGCAGAGGAC TTGAGAGAGA
    TACTGGGAGA TTTGCATTTG AATGATGATC TGTGTAATAA ACTTCAAAAA
    AGCATGGATG AAGCTGCGGT GTTGAAGAAG GAAGCATCCG ACGAGCGCTT
    AAAGCGGATT GAATCTGAAC GATTGGCCAG GACATTGGAA GATTTGTATT
    TAAGCCAGGT CCAACAAAGG AAAGAAACAG AGGAATCTCT TTCAAGGGTA
    CAACAAGAGT TTGAACAACT TAAAATACAG CAAGATGAGG TCACCGTGGA
    ACTTCAGAGA GTCAATGAGC AGAATGAGAA TCTACTAGGT CAACTCTCAG
    ACTCCAGAGA GCATTTTGAA TGGCTTCTAT CTGAGCATGA CCAATTGCTA
    CGTGAACGAG ATAATGCAGT TCGAGAGGTT GAAGAACTAC GTCAGAAAAG
    AGGACAGATG CTTTCAGTTT TGGTTACAGC GATGCACTGT GAATTTTCAT
    CATCTGAAGT GGAATCTGCA ACAGAAAATT TTAGTAATTC ATTGAAGATT
    GGAGAAGGTG GGTTTGGCTG CGTATACAAA GGTATCCTCC GGAACATGAC
    AGTTGCAATA AAGGTGCTGA GACCTGATAG TTTACAGGGA CAATCACAGT
    TCGAACAAGA GGTTTCTATC CTCAGTAGAG TGAGACACCC TCACCTTGTG
    ACTCTCTTAG GAGCTTGCTC AGAGTCTTCA ACACTCGTAT ACGAGTTCCT
    GCCAAATGGA AGCCTAGAAG ATTTTCTTAT GTGTTCAGAT AAGAGGCAAA
    CTCTGACGTG GCAGGCTCGG ATTCGAATTA TTGCTG

    Gene models with high sequence identity

    1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
      E-value: 7e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tetratricopeptide repeat 5.9
    ProfileScan Tetratricopeptide repeat 10.237
    ProfileScan Tetratricopeptide repeat 6.254
    ProfileScan Tetratricopeptide repeat 8.201
    ProfileScan Protein kinase, catalytic domain 14.436
    ProfileScan Tetratricopeptide repeat-containing 8.115
    ProfileScan Tetratricopeptide repeat-containing 22.432
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Tetratricopeptide repeat 0.14
    HMMSmart Tetratricopeptide repeat 0.000048
    HMMSmart Tetratricopeptide repeat 0.048
    HMMSmart Tetratricopeptide repeat 0.012
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 8.9e-100
    HMMPanther TPR REPEAT CONTAINING PROTEIN 8.9e-100
    HMMPfam Tetratricopeptide TPR-1 0.0000096
    HMMPfam Serine-threonine/tyrosine-protein kinase 2.6e-17
    superfamily TPR-like 7.7e-37
    superfamily Protein kinase-like domain 5.2e-28
    Gene3D Tetratricopeptide-like helical 1.1e-35
    Gene3D no description 7.4e-21

    See the detailed result >

    AT1G62740.1

    Model type
    Protein coding
    Short Description
    stress-inducible protein, putative
    Computational Description
    stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR